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BioLiP
>protein
FRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHP
NIQAAKDCNQVRDFITKEVSDVNTAEWGTFVAV

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6we0:A 119 118 1.0000 0.9496 0.9576 5.81e-78 6we1:A, 6we1:D
2 7kik:A 121 76 0.6372 0.5950 0.9474 1.29e-45
3 7kik:A 121 42 0.3628 0.3388 0.9762 2.28e-23
4 7vg8:A 108 114 0.3805 0.3981 0.3772 1.53e-17
5 4bt2:A 237 71 0.1770 0.0844 0.2817 0.59 4bt3:A, 4bt4:A, 4bt5:A, 4bt6:A, 4bt7:A
6 2f2t:A 158 60 0.1593 0.1139 0.3000 0.93 2f2t:B, 2f62:A, 2f62:B, 2f64:A, 2f64:B, 2f67:A, 2f67:B
7 4uw0:A 501 33 0.1239 0.0279 0.4242 6.6 4azw:A
8 1hbr:A 141 88 0.1947 0.1560 0.2500 6.7 1hbr:C
9 4ax8:A 450 33 0.1239 0.0311 0.4242 6.9 4azs:A, 4azt:A, 4azv:A
10 2ckp:A 316 72 0.1947 0.0696 0.3056 7.3
11 4a0a:B 355 64 0.1416 0.0451 0.2500 9.0 4a08:B, 4a09:B, 4a0b:B, 4a0b:D, 4a0k:D, 4a0l:B, 4a0l:D, 3ei1:B, 3ei2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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