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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FQSNATIELSIVIPMYNEEDNLEHLFARLLEVLTPLKITYEIICVNDGSKDKTLKQLIDCYQSNRQIKIVNLSRNFGKEI
ALSAGIDYAQGNAVIPIDADLQDPPELIHELVDKWREGYDIVYATRRSRQGMTEIKIPPNTGDFRLMDRKVVNAIKQLPE
RTRFMKGLFAWVGYRQTFVLFDRNYWKLWNAALDGIFSFSLLPLKVWTYLGSIISLLSLAYASFLILKTITLGDVPGYAS
LMVAILFLGGVQLISLGVIGEYLGRVYEEVKARPLYLVSDLWGLEYLP

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5eke:C 307 306 0.9965 0.9349 0.9379 0.0 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
2 5mlz:A 355 134 0.1667 0.1352 0.3582 2.42e-19 5mm0:A, 5mm1:A
3 5tze:C 349 99 0.1007 0.0831 0.2929 1.90e-05 5tze:E, 5tzj:C, 5tzj:A, 5tzk:C
4 2z86:C 603 128 0.1181 0.0564 0.2656 0.003 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
5 2z86:C 603 99 0.1076 0.0514 0.3131 0.053 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
6 7pe4:A 310 115 0.1042 0.0968 0.2609 0.004 7p8g:A, 7pd5:A, 7pdo:A, 7pho:A, 7pho:B, 7qi9:A, 7qi9:B, 7qib:A, 7qib:B, 7qoq:A, 7qoq:B
7 4dec:A 284 120 0.1146 0.1162 0.2750 0.008 4de7:A, 3e25:A, 5jsx:A, 5jt0:A, 5juc:A, 5jud:A, 4y6n:A, 4y6u:A, 4y7f:A, 4y7g:A, 4y9x:A
8 8bz6:A 606 114 0.0903 0.0429 0.2281 0.11 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
9 8cpl:C 499 136 0.1181 0.0681 0.2500 0.19 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
10 8viw:B 545 156 0.1354 0.0716 0.2500 0.20 8vh7:A, 8vh7:B, 8vh8:A, 8vh8:B, 8vh8:C, 8vh8:D, 8viw:A, 8viw:D, 8viw:C
11 7zmb:C 441 161 0.1215 0.0794 0.2174 1.2 7zm7:C, 7zmg:C
12 2ash:A 361 27 0.0486 0.0388 0.5185 1.3 2ash:B, 2ash:C, 2ash:D
13 7zjw:E 519 63 0.0729 0.0405 0.3333 2.2 5izl:A, 5izl:B
14 5izk:B 451 42 0.0590 0.0377 0.4048 2.7
15 6uhh:A 206 97 0.0972 0.1359 0.2887 3.8 6uhh:B
16 6coc:A 260 104 0.1007 0.1115 0.2788 4.9 6coc:B, 6cod:A, 6cod:B, 6coe:A, 6coe:B, 6cog:A, 6cog:B, 6coh:A, 6coh:B, 6coi:A, 6coi:B
17 6h0b:B 521 95 0.0903 0.0499 0.2737 5.0
18 6iwq:A 546 98 0.1042 0.0549 0.3061 5.7 6iwq:B, 6iwq:C, 6iwq:D, 6iwq:E, 6iwq:F, 6iwr:A, 6iwr:B, 6iwr:C, 6iwr:D, 6iwr:E, 6iwr:F
19 7wv3:A 668 102 0.1076 0.0464 0.3039 6.5 7wv3:B, 7wv3:C, 7wv3:D, 7wv4:A, 7wv4:B, 7wv4:C, 7wv4:D, 7wv5:A, 7wv5:B, 7wve:A, 7wve:B, 7wvf:A, 7wvf:B, 7wvj:A, 7wvj:B
20 5izm:B 495 27 0.0486 0.0283 0.5185 7.7 5izk:A, 5izm:A
21 7pgr:N 2423 60 0.0729 0.0087 0.3500 9.5 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
22 6pu0:A 480 102 0.1007 0.0604 0.2843 9.5 6ptz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218