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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FQKKKAEVCIRTSQFKVNKLLNRKQFIVEVNHPHWCGTVPTQLIRKKLATLYKVPDASQVSLFGFKTKFGGGKTTGFGLI
YDDLASLKRFEPNYRKTRMGFGKARLPARKSVKERRNRNKKLRGKAK

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8rxh:SZ 130 127 1.0000 0.9769 1.0000 4.61e-91 8a3w:SZ, 8a98:SZ, 6az1:Z, 8ovj:SZ, 8rxx:SZ, 5t2a:AT
2 4v8m:AT 131 123 0.7874 0.7634 0.8130 1.17e-58 7ase:y, 5opt:Y, 8ova:AT, 8ove:AT
3 4v7e:BY 138 117 0.4567 0.4203 0.4957 2.40e-34 8ip8:ba, 8ip9:ba, 8ipa:ba, 8ipb:ba, 8jiw:BY, 4v3p:SU
4 8auv:H 127 117 0.4488 0.4488 0.4872 1.13e-33 8b2l:H1, 7qix:U, 7qiz:KA
5 9bh5:AY 123 122 0.5197 0.5366 0.5410 6.55e-33 9cai:AY
6 4v6w:AY 126 121 0.4961 0.5000 0.5207 2.95e-32 6xu6:AY, 6xu7:AY, 6xu8:AY
7 7r81:Z2 124 123 0.4646 0.4758 0.4797 8.57e-32
8 8c3a:a 134 118 0.4409 0.4179 0.4746 3.56e-30 8c3a:DL, 8cq7:a, 8cq7:DL, 8cqw:a, 8cqw:DL, 8cre:a, 8cre:DL, 8oeq:a, 8oeq:DL, 7pzy:Z, 7q08:Z, 7q0f:Z, 7q0p:Z, 7q0r:Z, 8q5i:Z
9 7olc:SY 132 120 0.4567 0.4394 0.4833 4.24e-30 7old:SY, 8oo0:SY, 5oql:y, 6rxu:Co, 6rxv:Co, 6rxx:Co, 6rxz:Co, 7z3n:SY, 7z3o:SY
10 7a1g:d 134 121 0.4409 0.4179 0.4628 7.64e-30 7ajt:DY, 7aju:DY, 7b7d:d, 8bn3:D4, 8bqd:d, 8bqx:d, 8c00:d, 8c01:d, 8c83:d, 8cah:d, 8cas:d, 8cbj:Y, 8ccs:0, 8cdl:0, 8cdr:0, 8ceh:0, 8cf5:0, 8cg8:0, 8cgn:0, 8civ:0, 8cku:0, 8cmj:0, 7d4i:SZ, 7d5t:SZ, 7d63:SZ, 5dat:D4, 5dat:d4, 5dc3:D4, 5dc3:d4, 5dge:D4, 5dge:d4, 5dgf:D4, 5dgf:d4, 5dgv:D4, 5dgv:d4, 6eml:d, 8eub:BY, 8evp:BY, 8evq:BY, 8evr:BY, 8evs:BY, 8evt:BY, 8ewb:BY, 8ewc:BY, 6fai:Y, 5fci:D4, 5fci:d4, 5fcj:D4, 5fcj:d4, 6fyx:Y, 6fyy:Y, 6gq1:AO, 6gqb:AO, 6gqv:AO, 6gsm:Y, 6gsn:Y, 6hhq:Z, 6hhq:d4, 5i4l:D4, 5i4l:d4, 6i7o:d, 6i7o:db, 8i7j:Y, 5it7:Y, 5it9:Y, 3j16:D, 3j6x:24, 3j6y:24, 3j77:24, 3j78:24, 3j80:Y, 3j81:Y, 3jam:Y, 3jap:Y, 5juo:VB, 5jup:VB, 5jus:VB, 5jut:VB, 5juu:VB, 8k2d:SY, 8k82:SY, 6ke6:SZ, 5ll6:d, 6lqp:SZ, 6lqq:SZ, 6lqr:SZ, 6lqs:SZ, 6lqt:SZ, 6lqu:SZ, 6lqv:SZ, 5lyb:D4, 5lyb:d4, 5m1j:Y2, 5mc6:d, 5mei:d4, 5mei:Z, 7mpi:BY, 7mpj:BY, 7n8b:BY, 5ndg:D4, 5ndg:d4, 5ndv:D4, 5ndv:d4, 5ndw:D4, 5ndw:d4, 7nrc:Sd, 7nrd:Sd, 5obm:D4, 5obm:d4, 5on6:d4, 5on6:Z, 7osa:eS24, 7osm:eS24, 6q8y:d, 6rbd:Y, 6rbe:Y, 7rr5:SY, 8rw1:Y, 6s47:BZ, 8s8d:Y, 8s8e:Y, 8s8f:Y, 8s8g:Y, 8s8h:Y, 8s8i:Y, 8s8j:Y, 6snt:Y, 7suk:LF, 6sv4:d, 6sv4:db, 6sv4:dc, 6t4q:SY, 6t7i:SY, 6t7t:SY, 6t83:Yb, 6t83:z, 5tbw:Z, 5tbw:d4, 6tb3:d, 5tga:D4, 5tga:d4, 5tgm:D4, 5tgm:d4, 6tnu:d, 4u3m:D4, 4u3m:d4, 4u3n:D4, 4u3n:d4, 4u3u:D4, 4u3u:d4, 4u4n:D4, 4u4n:d4, 4u4o:D4, 4u4o:d4, 4u4q:D4, 4u4q:d4, 4u4r:D4, 4u4r:d4, 4u4u:D4, 4u4u:d4, 4u4y:D4, 4u4y:d4, 4u4z:D4, 4u4z:d4, 4u50:D4, 4u50:d4, 4u51:D4, 4u51:d4, 4u52:D4, 4u52:d4, 4u53:D4, 4u53:d4, 4u55:D4, 4u55:d4, 4u56:D4, 4u56:d4, 4u6f:D4, 4u6f:d4, 4uer:P, 6uz7:Y, 4v6i:AU, 4v88:AY, 4v88:CY, 4v8y:AY, 4v8z:AY, 4v92:BY, 6wdr:Y, 5wlc:LF, 6woo:YY, 7wtl:SY, 7wtm:SY, 7wtn:SY, 7wto:SY, 7wtp:SY, 7wtq:SY, 7wtr:SY, 5wyj:SZ, 5wyk:SZ, 6xiq:AO, 6xir:AO, 8y0u:SY, 6y7c:Y, 6z6j:SY, 6z6k:SY, 6zce:Z, 7zpq:AY, 6zqb:DY, 6zqc:DY, 6zqd:DY, 6zqe:DY, 6zqf:DY, 6zqg:DY, 7zrs:AY, 6zu9:d, 7zuw:AY, 7zux:DY, 6zvi:I, 7zw0:sd
11 3j7a:1 120 119 0.4094 0.4333 0.4370 4.84e-28 3jbn:1, 3jbo:1, 3jbp:1, 6okk:a, 8tpu:S1
12 6zj3:SZ 127 113 0.4094 0.4094 0.4602 1.08e-26
13 5xxu:Y 128 120 0.3858 0.3828 0.4083 7.91e-26
14 8r6f:Y 124 117 0.4488 0.4597 0.4872 4.31e-25
15 4bts:AP 148 119 0.3858 0.3311 0.4118 2.85e-23 4bts:BP, 4bts:CP, 4bts:DP, 5jpq:0, 4v5o:AP, 4v5o:BP
16 6fec:s 131 121 0.4882 0.4733 0.5124 6.80e-23 7a01:I5, 7a09:z, 5a2q:Y, 5aj0:BY, 9bdl:AS24, 9bdn:AS24, 9bdp:AS24, 8bhf:Z3, 9bkd:T, 9bln:T, 8btk:Ax, 7cpu:SY, 7cpv:SY, 4d5l:Y, 4d61:Y, 6d90:ZZ, 6d9j:ZZ, 9f1b:Ax, 9f1c:Ax, 9f1d:Ax, 5flx:Y, 6g18:Y, 6g4s:Y, 6g4w:Y, 6g51:Y, 6g53:Y, 6g5h:Y, 6g5i:Y, 8g5y:SY, 8g5z:SY, 8g60:SY, 8g61:SY, 8g6j:SY, 8glp:SY, 6gz3:BY, 6gz4:BY, 6gz5:BY, 6hcf:Z1, 6hcj:Z2, 6hcm:Z1, 6hcq:Z2, 8ifd:3N, 8ife:3N, 6ip5:3N, 6ip6:3N, 6ip8:3N, 3j7p:SY, 3j7r:SY, 3jag:YY, 3jah:YY, 3jai:YY, 3jaj:SY, 3jan:SY, 8jdj:AK, 8jdk:AK, 8jdl:AK, 8jdm:AK, 7jqb:Z, 7jqc:Z, 5k0y:s, 8k2c:SY, 7k5i:Y, 4kzx:Y, 4kzy:Y, 4kzz:Y, 5lks:SY, 7ls1:Q3, 7ls2:Q3, 5lzs:YY, 5lzt:YY, 5lzu:YY, 5lzv:YY, 5lzw:YY, 5lzx:YY, 5lzy:YY, 5lzz:YY, 7mdz:YY, 7mq8:LF, 7mq9:LF, 7mqa:LF, 6mtb:YY, 6mtc:YY, 6mtd:YY, 6mte:YY, 7nwg:Z2, 7nwh:YY, 7nwi:YY, 7o7y:Ax, 7o7z:Ax, 7o80:Ax, 7o81:Ax, 5oa3:Y, 6ole:SY, 6olf:SY, 6olg:BY, 6oli:SY, 6olz:BY, 6om0:SY, 6om7:SY, 7oya:Y2, 7oyb:Y2, 7oyc:Y2, 7oyd:YY, 8oz0:e, 8p03:a, 8p09:a, 8p2k:Ax, 6p4g:Z, 6p4h:Z, 6p5i:Z, 6p5j:Z, 6p5k:Z, 6p5n:Z, 8pj1:T, 8pj2:T, 8pj3:T, 8pj4:T, 8pj5:T, 8pj6:T, 8ppk:Y, 8ppl:AY, 8q7z:Ax, 8q87:Ax, 7qgg:SY, 8qoi:SY, 7qp6:T, 7qp7:T, 7qvp:SY, 7qvp:RY, 6qzp:SY, 7r4x:Y, 6r5q:NN, 6r6g:NN, 6r6p:NN, 6r7q:NN, 8scb:YY, 6sgc:Z1, 7syg:Z, 7syh:Z, 7syi:Z, 7syj:Z, 7syk:Z, 7syl:Z, 7sym:Z, 7syn:Z, 7syo:Z, 7syp:Z, 7syq:Z, 7syr:Z, 7sys:Z, 7syt:Z, 7syu:Z, 7syv:Z, 7syw:Z, 7syx:Z, 5t2c:AQ, 8t4s:Y, 7toq:AS24, 7tor:AS24, 7tql:Y, 7ucj:YY, 7uck:YY, 4ug0:SY, 4ujc:CY, 4ujd:CY, 4uje:BY, 4v6x:AY, 5vyc:Y1, 5vyc:Y2, 5vyc:Y3, 5vyc:Y4, 5vyc:Y5, 5vyc:Y6, 6w2s:Z, 6w2t:Z, 7wts:Y, 7wtt:Y, 7wtu:Y, 7wtv:Y, 7wtw:Y, 7wtx:Y, 7wtz:Y, 7wu0:Y, 6xa1:SY, 7xnx:SY, 7xny:SY, 8xsx:SY, 8xsy:SY, 8xsz:SY, 8xxl:SY, 8xxm:SY, 8xxn:SY, 6y0g:SY, 8y0w:SY, 8y0x:SY, 6y2l:SY, 6y57:SY, 6yal:a, 6yam:a, 6yan:a, 6ybw:T, 8yoo:SY, 8yop:SY, 6z6l:SY, 6z6m:SY, 6z6n:SY, 7zjw:Sj, 7zjx:Sj, 6zlw:Y, 6zm7:SY, 6zme:SY, 6zmi:SY, 6zmo:SY, 6zmt:Y, 6zmw:T, 6zn5:Y, 6zoj:Y, 6zok:Y, 6zon:z, 6zp4:z, 6zuo:Y, 6zv6:Y, 6zvh:Y, 6zvj:z, 6zvk:I5, 6zxd:Y, 6zxe:Y, 6zxf:Y, 6zxg:Y, 6zxh:Y
17 8fvy:Y 122 122 0.3622 0.3770 0.3770 2.21e-19 8br8:Sb, 8brm:Sb, 8bsi:Sb, 8bsj:Sb, 8btd:Sb, 8btr:Sb, 8g4s:Y, 7pwf:Y, 7pwo:Y1
18 5xyi:Y 105 104 0.3307 0.4000 0.4038 5.35e-11
19 7qep:D4 127 119 0.2283 0.2283 0.2437 5.49e-04
20 5jb3:V 99 92 0.1969 0.2525 0.2717 7.24e-04 5jbh:V, 6sw9:V, 6swc:V, 6swd:V, 4v4n:BV, 4v6u:AV, 4v6u:B6, 7zag:V, 7zah:V, 7zai:V, 7zhg:V
21 8p5d:SY0 136 112 0.2520 0.2353 0.2857 0.003 8p60:SY0, 8p60:RY0, 7qca:SY0
22 6skf:Aw 95 92 0.1732 0.2316 0.2391 0.037 6skg:Aw, 6skg:Bn, 6th6:Aw
23 6rm3:SY0 125 80 0.1654 0.1680 0.2625 0.13
24 6tmf:X 97 94 0.1890 0.2474 0.2553 0.18
25 6zu5:SY0 123 90 0.1496 0.1545 0.2111 0.22
26 7miz:x 143 29 0.0787 0.0699 0.3448 2.9 7miz:k, 7tnq:w, 7tnq:x
27 8hkx:S24E 96 77 0.1575 0.2083 0.2597 3.1 8hky:S24E, 8hkz:S24E, 8hl1:S24E, 8hl2:S24E, 8hl3:S24E, 8hl4:S24E, 8hl5:S24E, 8wkp:S24E, 8wq2:S24E, 8wq4:S24E
28 6sj7:A 355 49 0.1260 0.0451 0.3265 5.7 8rox:A
29 8wie:D 189 49 0.0945 0.0635 0.2449 7.3 8aav:A, 8aav:B, 8aav:C, 8aav:D, 8aav:E, 8aav:F, 8aav:G, 8aav:H, 4dyx:A, 4dyy:A, 4dyz:A, 4dz0:A, 3es3:A, 6h6t:A, 6h6t:B, 6h6t:C, 6h6t:D, 6h6t:E, 6h6t:F, 6h6u:A, 6h6u:B, 6h6u:C, 6h6u:D, 6h6u:E, 6h6u:F, 7jgl:A, 7jgl:C, 7jgl:B, 7jgl:D, 7jgl:F, 7jgl:E, 7jgl:G, 7jgl:H, 7jgl:I, 7jgl:J, 7jgl:K, 7jgl:L, 7jgl:M, 7jgl:N, 7jgl:O, 7jgl:n, 7jgl:P, 7jgl:Q, 7jgl:R, 7jgl:q, 7jgl:S, 7jgl:T, 7jgl:U, 7jgl:V, 7jgl:W, 7jgl:X, 7jgl:w, 7jgl:a, 7jgl:b, 7jgl:c, 7jgl:d, 7jgl:e, 7jgl:f, 7jgl:g, 7jgl:h, 7jgl:i, 7jgl:j, 7jgl:k, 7jgl:l, 7jgl:m, 7jgl:o, 7jgl:p, 7jgl:r, 7jgl:s, 7jgl:t, 7jgl:u, 7jgl:v, 7jgl:x, 7jgm:F, 7jgm:f, 7jgm:I, 7jgm:i, 7jgm:q, 7jgm:W, 7jgm:w, 7jgm:C, 7jgm:c, 7jgm:L, 7jgm:l, 7jgm:N, 7jgm:n, 7jgm:t, 7jgn:A, 7jgn:B, 7jgn:c, 7jgn:C, 7jgn:D, 7jgn:E, 7jgn:f, 7jgn:F, 7jgn:G, 7jgn:H, 7jgn:i, 7jgn:I, 7jgn:J, 7jgn:K, 7jgn:l, 7jgn:L, 7jgn:M, 7jgn:N, 7jgn:O, 7jgn:P, 7jgn:Q, 7jgn:R, 7jgn:S, 7jgn:T, 7jgn:U, 7jgn:V, 7jgn:W, 7jgn:X, 7jgn:a, 7jgn:b, 7jgn:d, 7jgn:e, 7jgn:g, 7jgn:h, 7jgn:j, 7jgn:k, 7jgn:m, 7jgn:n, 7jgn:o, 7jgn:p, 7jgn:q, 7jgn:r, 7jgn:s, 7jgn:t, 7jgn:u, 7jgn:v, 7jgn:w, 7jgn:x, 5jkl:A, 5jkl:B, 5jkl:C, 5jkl:D, 5jkl:E, 5jkl:F, 5jkm:A, 5jkm:B, 5jkm:C, 5jkm:D, 5jkm:E, 5jkm:F, 7k26:D, 7k26:K, 8pp2:A, 8pp2:B, 8pp2:C, 8pp2:D, 8pp2:E, 8pp2:F, 8pp3:A, 8pp3:B, 8pp3:C, 8pp3:D, 8pp3:E, 8pp3:F, 8pp4:A, 8pp4:B, 8pp4:C, 8pp4:D, 8pp4:E, 8pp4:F, 5up8:A, 5up9:B, 5up9:F
30 7u5l:A 173 50 0.1024 0.0751 0.2600 9.2 3erz:G, 3erz:J, 3erz:L, 8pp5:A, 8pp5:B, 8pp5:C, 8pp5:D, 8pp5:E, 8pp5:F, 7u5l:B, 7u5l:C, 7u5l:D, 7u5l:E, 7u5l:F, 7u5l:G, 7u5l:H, 7u5l:I, 7u5l:J, 7u5l:K, 7u5l:L, 7u5l:M, 7u5l:N, 7u5l:O, 7u5l:P, 7u5l:Q, 7u5l:R, 7u5l:S, 7u5l:T, 7u5l:U, 7u5l:V, 7u5l:W, 7u5l:X, 2z6m:A, 2z6m:C, 2z6m:E, 2z6m:B, 2z6m:D, 2z6m:F, 2z6m:G, 2z6m:I, 2z6m:K, 2z6m:J, 2z6m:L
31 8fs6:G 298 20 0.0630 0.0268 0.4000 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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