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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FQHMASWDIFCSVVDNYGDIGVTWRLARQLAAEHGQAVRLWVDEPQAFARICPRADPVAHVQCLDGVEVRAWGRPWAPVA
AADVVIEAFACELPEAHRQAMRERKRPSLWLNLEYLSAEEWIGSCHALPSLQACGLSKYFFFPGFREPSGGLLREAGLLE
RRRRFQASVSAQDEFLASLGVRRKVGERLISLFAYENPALPGWLEQLRDARQPSLLLVPEGRVLADVADWLRVATLAVGD
VHVRDALRVQVLPFMAQDDYDRLLWCCDLNAVRGEDSFVRAQWAGRPLLWHIYRTHLAKLEAFLELYCAGLPADLAENLR
TFWLAWNAGGGLAGAWEGLERQLPEWRREAQRWADEQGMRPDLAARLVQFYADWLLEHHHHHH

The query sequence (length=383) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j7k:A 385 385 0.9948 0.9896 0.9896 0.0 6j7l:A, 6j7m:A, 6j7m:C
2 5nv8:A 303 367 0.4543 0.5743 0.4741 4.86e-87
3 5xvr:A 381 382 0.3681 0.3701 0.3691 2.69e-59 7f2a:A, 7f2a:F, 7vch:A, 7vch:F, 5wxi:A, 5wxi:B, 5wxk:A, 5xvr:B
4 6geq:A 395 106 0.0966 0.0937 0.3491 0.49 3cxv:A, 3cxx:A, 3cxy:A, 3cxz:A, 3cy0:A, 3cy1:A, 5edt:A, 4g1x:A, 4g2g:A, 4g44:A, 4g45:A, 4g46:A, 4g47:A, 4g48:A, 3g5f:A, 3g5h:A, 6geo:A, 5ibd:A, 5ibe:A, 5ibf:A, 5ibg:A, 5ibh:A, 5ibi:A, 5ibj:A, 4ict:A, 2ij5:A, 2ij5:B, 2ij5:C, 2ij5:D, 2ij5:E, 2ij5:F, 2ij7:A, 2ij7:B, 2ij7:C, 2ij7:D, 2ij7:E, 2ij7:F, 4ips:A, 4ipw:A, 4iq7:A, 4iq9:A, 4ktf:A, 4ktj:A, 4ktk:A, 4ktl:A, 1n40:A, 1n4g:A, 7nqm:A, 7nqn:A, 7nqo:A, 5o4k:A, 5o4l:A, 5op9:A, 5opa:A, 6rq0:A, 6rq1:A, 6rq3:A, 6rq5:A, 6rq6:A, 6rq8:A, 6rq9:A, 6rqb:A, 6rqd:A, 6rqe:A, 7ruk:A, 7s0o:A, 8tdp:A, 8tdq:A, 6te7:A, 6tet:A, 6tev:A, 6upg:A, 6upi:A, 5wp2:A
5 2luy:A 96 30 0.0287 0.1146 0.3667 0.54
6 8ewg:A 1017 134 0.0966 0.0364 0.2761 1.8
7 6sga:F8 513 31 0.0313 0.0234 0.3871 2.0 6sgb:F8
8 4hap:A 431 44 0.0313 0.0278 0.2727 2.1 4hap:B, 4haq:A, 4haq:B, 4ipm:A
9 3lee:F 262 42 0.0366 0.0534 0.3333 6.0
10 3asx:A 335 42 0.0366 0.0418 0.3333 6.0 1ezf:A, 1ezf:B, 1ezf:C, 3lee:A, 3lee:B, 3lee:C, 3lee:D, 3lee:E, 3q2z:A, 3q30:A, 3v66:A, 3vj9:A, 3vjc:A, 3vjc:B, 3vjc:C, 3vjc:D, 3vjc:E, 3vjc:F, 3wc9:A, 3wc9:B, 3wc9:C, 3wc9:D, 3wc9:E, 3wc9:F, 3wcd:A, 3wcd:B, 3wcd:D, 3wcd:E, 3wcf:A, 3wcf:B, 3wcf:C, 3wcf:D, 3wcf:E, 3wcf:F, 3wch:A, 3wch:B, 3wch:C, 3wch:D, 3wch:E, 3wch:F, 3wci:A, 3wci:B, 3wci:C, 3wci:D, 3wci:E, 3wci:F, 3wcj:A, 3wcj:B, 3wcj:C, 3wcj:D, 3wcj:E, 3wcj:F, 3wcl:A, 3wcm:A, 3wcm:B, 3wcm:C, 3wcm:D, 3wcm:E, 3wcm:F, 3wef:A, 3wef:B, 3wef:C, 3wef:D, 3wef:E, 3weg:A, 3weh:A, 3wei:A, 3wej:A, 3wek:A, 3wsa:A, 3wsa:B, 3wsa:C, 3wsa:E, 8wtq:A, 8wtr:A
11 5my1:Y 1372 47 0.0418 0.0117 0.3404 6.8 8aby:D, 8abz:D, 8ac0:D, 8ac1:D, 8ac2:D, 8acp:D, 7adb:Y, 7adc:Y, 7add:Y, 7ade:Y, 8ad1:D, 6alf:J, 6alg:J, 6alh:J, 6asx:J, 7bef:D, 7beg:D, 6bjs:J, 6c6s:J, 6c6t:J, 6c6u:J, 6c9y:D, 7c97:D, 6ca0:D, 7chw:D, 7d7c:D, 7d7d:D, 7dy6:D, 8e3f:B, 8e5k:B, 8e5o:B, 8e6x:B, 8e6z:B, 8eg7:J, 8eg8:J, 8eh8:J, 8eh9:J, 8eha:J, 8ehf:J, 8ehi:J, 8f1i:J, 8f1j:J, 8f1k:J, 8f3c:J, 8fix:D, 8fiy:D, 8ftd:J, 8g00:J, 8g1s:J, 8g2w:J, 8g4w:J, 8g7e:J, 8g8z:J, 6gov:Y, 5ipm:D, 5ipn:D, 3iyd:D, 6jbq:D, 6jnx:D, 8jo2:D, 6k4y:D, 8k58:D, 8k5a:D, 7khb:D, 7khc:D, 7khe:D, 7khi:D, 3lu0:D, 7mkn:D, 7mko:D, 7mkp:D, 5ms0:D, 6n4c:D, 6n57:J, 6n58:J, 5nwt:D, 6oul:J, 8pdy:J, 8pen:J, 8pfg:J, 8pfj:J, 8ph9:J, 8phk:J, 8pib:J, 8pid:J, 8pil:J, 8pim:J, 6psq:J, 6psr:J, 6pss:J, 6psu:J, 6psv:J, 6psw:J, 7py0:D, 7py1:D, 7py5:D, 7py6:D, 7py7:D, 7py8:D, 7q0j:D, 7q0k:D, 6rh3:D, 6ri7:D, 6ri9:D, 6rin:D, 6rip:D, 7szj:D, 7szk:D, 8to1:J, 8tom:J, 6tqn:Y, 6tqo:Y, 8u3b:D, 8upo:AE, 8upr:AE, 8uql:AE, 8uqm:AE, 8uqp:AE, 8ur0:AE, 8urh:AE, 8uri:AE, 8urx:AE, 8ury:AE, 6utv:DDD, 6utw:DDD, 6utx:DDD, 6uty:DDD, 6utz:DDD, 6uu0:DDD, 6uu1:DDD, 6uu2:DDD, 6uu3:DDD, 6uu4:DDD, 6uu5:DDD, 6uu6:DDD, 6uu7:DDD, 6uu8:DDD, 6uu9:DDD, 6uua:DDD, 6uub:DDD, 6uuc:DDD, 6vu3:AE, 6vyq:AE, 6vyr:AE, 6vys:AE, 6vyt:AE, 6vyu:AE, 6vyw:AE, 6vyx:AE, 6vyy:AE, 6vyz:AE, 6vz2:AE, 6vz3:AE, 6vz5:AE, 6vz7:AE, 6vzj:AE, 6wmu:D, 6x26:J, 6x2f:J, 6x2n:J, 6x43:J, 6x4w:J, 6x4y:J, 6x50:J, 6x6t:AE, 6x7f:AE, 6x7k:AE, 6x9q:AE, 6xdq:AE, 6xdr:AE, 6xgf:AE, 6xii:AE, 6xij:AE, 6xl9:D, 7xue:J, 7xug:J, 4yln:D, 4yln:J, 4yln:P, 4ylo:D, 4ylo:J, 4ylo:P, 4ylp:D, 4ylp:J, 4ylp:P, 7ypa:D, 6z9p:Y, 6z9q:Y, 6z9r:Y, 6z9s:Y, 6z9t:Y
12 6g1q:B 331 73 0.0496 0.0574 0.2603 7.2 7aqm:A, 7aqm:B, 6g1p:A, 6g1p:B, 6g1q:A, 6hgz:A, 6hgz:B, 6hh3:A, 6hh3:B, 6hh4:A, 6hh4:B, 6hh5:A, 6hh5:B, 6hoz:A, 6hoz:B
13 8bqb:A 331 33 0.0418 0.0483 0.4848 7.5 8bqb:B, 8bqb:C
14 4rh7:A 3005 105 0.0653 0.0083 0.2381 8.2
15 4jk1:D 1160 45 0.0418 0.0138 0.3556 8.2 4jk1:I, 4jk2:D, 4jk2:I, 4kmu:D, 4kmu:I, 4kn4:D, 4kn4:I, 4kn7:D, 4kn7:I, 4mex:D, 4mex:J, 4mey:D, 4mey:J, 4s20:D, 4zh3:D, 4zh4:D
16 1wa3:D 203 138 0.0757 0.1429 0.2101 8.7 1wa3:A, 1wa3:B, 1wa3:C, 1wa3:E, 1wa3:F
17 6sc2:B 3930 105 0.0653 0.0064 0.2381 9.1 6rla:A, 6rla:B, 6sc2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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