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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMENAFLSINDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHR
IGHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSS
LGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMA
WIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGG
IGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKA

The query sequence (length=391) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2e1z:A 394 394 0.9974 0.9898 0.9898 0.0 2e20:A, 4fwk:A, 4fwm:A, 4fwn:A, 4fwo:A, 4fwp:A, 4fwq:A, 4fwr:A, 4fws:A, 1x3m:A, 1x3n:A, 4xh1:A, 4xh4:A, 4xh5:A
2 7fj8:A 395 392 0.4450 0.4405 0.4439 7.23e-108 7fj9:A, 7fj9:B, 7fja:A, 7fja:B, 7fjb:A, 7fjb:B
3 1tuu:A 399 392 0.4041 0.3960 0.4031 7.04e-97 1g99:A, 1g99:B, 1tuu:B, 1tuy:A, 1tuy:B
4 4ijn:A 376 377 0.4041 0.4202 0.4191 5.89e-93 4ijn:B
5 4iz9:A 381 387 0.3964 0.4068 0.4005 1.33e-85
6 1saz:A 375 225 0.1304 0.1360 0.2267 2.12e-09
7 5y3r:C 3636 102 0.0665 0.0072 0.2549 1.2
8 7ytp:A 731 53 0.0435 0.0233 0.3208 2.7 7ytp:B
9 5fjq:A 180 94 0.0665 0.1444 0.2766 3.2 5fjq:B, 5fjq:C
10 8jzk:A 214 66 0.0563 0.1028 0.3333 4.4
11 6qex:A 1182 156 0.0946 0.0313 0.2372 5.5 7a65:A, 7a69:A, 7a6c:A, 7a6e:A, 7a6f:A, 6c0v:A, 7o9w:A
12 6ciz:C 477 52 0.0409 0.0335 0.3077 6.1 6chi:A, 6chi:B, 6chi:C, 6chi:D, 6cir:A, 6cir:B, 6cir:C, 6cir:D, 6ciz:A, 6ciz:B, 6ciz:D, 8fda:A, 8fda:B, 8fda:C, 8fda:D, 5irq:A, 5irq:B, 5irq:C, 5irq:D, 5irv:A, 5irv:B, 5irv:C, 5irv:D, 4nkv:A, 4nkv:B, 4nkv:C, 4nkv:D, 4nkw:A, 4nkw:B, 4nkw:C, 4nkw:D, 4nkx:A, 4nkx:B, 4nkx:C, 4nkx:D, 4nky:A, 4nky:B, 4nky:C, 4nky:D, 4nkz:A, 4nkz:B, 4nkz:C, 4nkz:D, 3ruk:A, 3ruk:B, 3ruk:C, 3ruk:D, 3swz:A, 3swz:B, 3swz:C, 3swz:D, 5uys:A, 5uys:B, 5uys:C, 5uys:D, 6wr0:A, 6wr0:B, 6wr0:C, 6wr0:D, 6wr1:A, 6wr1:B, 6ww0:A, 6ww0:B, 6ww0:C, 6ww0:D
13 3uer:A 651 42 0.0409 0.0246 0.3810 7.8
14 2jks:A 284 125 0.0691 0.0951 0.2160 9.0
15 4pht:B 442 23 0.0256 0.0226 0.4348 9.8 1p9r:A, 1p9w:A, 4pht:A, 4pht:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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