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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FPVRTVTVVVPFAKGGPTDTVARLITAEMAKTLGQPIEIENMLGAGGTLAATRVAHAAPDGHTLIVGHLGTHGAAVALFP
KLAYRPDKDFTPVALLTEMPVLLLARKQFPPKDLSEFASYVESHTDNLNVAHAGFGSVSYASCLLLNRLLKVDPTGVPFS
GTGPALQALVEGQVDYMCDQIVNAVPALREGKVKAYVIAASERDPVVPDVPTAREAGLPGFQVGAWTGLFAPRGTPEPIV
AKLNAAVSRALDQSDVRTRLTDLGALVPRPEQRAPVVLAQLVQEEISRWEDVVE

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hke:B 296 294 1.0000 0.9932 1.0000 0.0 6hke:A, 6hke:C
2 2f5x:B 300 294 0.3946 0.3867 0.3946 5.30e-68 2f5x:A, 2f5x:C
3 5oei:A 299 294 0.3469 0.3411 0.3469 1.63e-57 5oku:A
4 2dvz:A 300 295 0.3469 0.3400 0.3458 3.00e-46
5 8hkb:A 302 291 0.3027 0.2947 0.3058 1.89e-45 8hka:A
6 7nds:A 294 289 0.3095 0.3095 0.3149 1.70e-44 7ndr:D
7 5ymr:B 798 94 0.0918 0.0338 0.2872 0.57 5ymr:D, 5ymr:C, 5ymr:A
8 7y7q:B 906 41 0.0476 0.0155 0.3415 2.6
9 1j1b:B 364 69 0.0748 0.0604 0.3188 4.0 4acc:A, 4acc:B, 4acd:A, 4acd:B, 4acg:A, 4acg:B, 4ach:A, 4ach:B, 6ae3:A, 6ae3:B, 4afj:A, 4afj:B, 8auz:A, 8auz:B, 8av1:A, 8av1:B, 7b6f:A, 4b7t:A, 6b8j:A, 8djc:A, 8djc:B, 8djd:A, 8djd:B, 8dje:A, 8dje:B, 3du8:A, 3du8:B, 3f7z:A, 3f7z:B, 3f88:A, 3f88:B, 5f94:A, 5f94:B, 5f95:A, 5f95:B, 8ff8:A, 8ff8:B, 3gb2:A, 6gjo:A, 6gjo:B, 1gng:A, 1gng:B, 6gn1:B, 6gn1:A, 6h0u:A, 6h0u:B, 6hk3:A, 6hk3:B, 6hk4:A, 6hk4:B, 6hk7:A, 5hln:A, 5hln:B, 5hlp:A, 5hlp:B, 1i09:B, 3i4b:A, 3i4b:B, 4iq6:B, 1j1b:A, 1j1c:A, 1j1c:B, 4j1r:A, 4j1r:B, 4j1r:C, 4j1r:D, 4j71:A, 4j71:B, 2jld:A, 2jld:B, 5k5n:A, 5k5n:B, 5kpk:A, 5kpk:B, 5kpl:A, 5kpl:B, 5kpm:A, 5kpm:B, 3l1s:B, 3m1s:A, 3m1s:B, 4nm0:A, 4nm3:A, 4nm5:A, 4nm7:A, 4nu1:A, 2o5k:A, 1o9u:A, 2ow3:A, 2ow3:B, 5oy4:A, 5oy4:B, 7oy5:A, 7oy5:B, 4ptc:A, 4ptc:B, 4pte:A, 4pte:B, 4ptg:A, 4ptg:B, 3pup:A, 3pup:B, 1pyx:A, 1pyx:B, 1q3d:A, 1q3d:B, 1q3w:A, 1q3w:B, 3q3b:A, 3q3b:B, 1q41:A, 1q41:B, 1q4l:A, 1q4l:B, 1q5k:A, 1q5k:B, 8qji:A, 1r0e:A, 1r0e:B, 3say:A, 3say:B, 3sd0:A, 3sd0:B, 7sxh:A, 7sxj:A, 5t31:A, 5t31:B, 6tcu:A, 7u2z:A, 7u2z:B, 7u31:A, 7u31:B, 7u33:A, 7u33:B, 7u36:A, 7u36:B, 1uv5:A, 6v6l:A, 8vme:A, 8vmf:A, 8vmg:A, 8xn6:A, 8xn6:B, 6y9r:A, 6y9s:A, 6y9s:B, 7z1f:A, 7z1f:B, 7z1g:A, 3zdi:A, 3zrk:A, 3zrk:B, 3zrl:A, 3zrl:B, 3zrm:A, 3zrm:B
10 8i6y:A 844 64 0.0680 0.0237 0.3125 5.5 8i6y:B
11 6o75:A 710 83 0.0952 0.0394 0.3373 8.6 6o74:A, 6o78:A, 6o79:A, 6o7b:A, 6o7d:A
12 8u2m:B 382 92 0.1190 0.0916 0.3804 8.7 8u2m:A, 8u2m:C, 8u3n:A, 8u3n:B, 8u3n:C, 8ukz:A, 8ukz:B, 8ukz:C
13 6o7i:A 741 83 0.0952 0.0378 0.3373 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218