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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FPPGHFKDPKRLYCKNGGFFLRIHPDGRVDGVREKSDPHIKLQLQAEERGVVSIKGVSANRYLAMKEDGRLLASKSVTDE
CFFFERLESNNYNTYRSRKYTSWYVALKRTGQYKLGSKTGPGQKAILFLPMS

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hue:A 135 132 0.9697 0.9481 0.9697 2.08e-94 1bfb:A, 1bfc:A, 1bff:A, 1fga:A, 4fgf:A, 1fq9:A, 1fq9:B, 8hue:B, 8hue:C, 4oee:A, 4oef:A, 4oeg:A, 5x1o:A
2 1djs:B 135 130 0.5530 0.5407 0.5615 2.20e-47 1afc:A, 1afc:B, 1afc:C, 1afc:D, 1afc:E, 1afc:F, 1afc:G, 1afc:H, 2afg:A, 2afg:B, 2afg:C, 2afg:D, 1axm:A, 1axm:B, 1axm:E, 1axm:C, 1axm:F, 1axm:D, 2axm:B, 2axm:A, 3cu1:B, 3cu1:D, 1e0o:C, 1e0o:A, 2erm:A, 1hkn:C, 1hkn:D, 2j3p:A, 2j3p:B, 3jut:A, 3jut:B, 3k1x:A, 3k1x:B, 2k8r:A, 3ojv:B, 3ojv:A, 1rml:A, 3ud7:B, 3ud8:A, 3ud9:B, 3uda:B, 2uus:A
3 1ijt:A 128 122 0.4091 0.4219 0.4426 2.61e-27
4 1g82:A 157 127 0.3788 0.3185 0.3937 5.00e-22
5 3f1r:A 157 127 0.3712 0.3121 0.3858 9.05e-22 3f1r:B
6 1q1u:A 138 126 0.3106 0.2971 0.3254 3.30e-17
7 7ysh:B 179 93 0.2348 0.1732 0.3333 5.73e-08 2p39:A, 7ysu:B, 7ysw:B
8 6zdp:A 683 62 0.1515 0.0293 0.3226 0.044
9 7vru:A 497 78 0.1591 0.0423 0.2692 1.3 7vs4:A
10 6bs3:B 355 74 0.1667 0.0620 0.2973 3.0 6bs4:B
11 8ryk:A 153 58 0.1212 0.1046 0.2759 3.3 8c3u:A, 8c3u:B, 5r85:A, 5r86:A, 5r87:A, 5r88:A, 5r89:A, 5r8a:A, 5r8b:A, 5r8c:A, 5r8d:A, 5r8e:A, 5r8f:A, 5r8g:A, 5r8h:A, 5r8i:A, 5r8j:A, 5r8k:A, 5r8l:A, 5r8m:A, 5r8n:A, 5r8o:A, 5r8p:A, 5r8q:A, 8ryk:B, 8rzb:A, 8rzb:D, 8rzb:B, 8rzb:C, 6y8i:A, 6y8m:A
12 8fhw:A 432 51 0.1212 0.0370 0.3137 3.3 8fhw:B, 8fhw:C, 8fhw:D
13 3cnz:A 333 53 0.0909 0.0360 0.2264 4.2 3cnz:B
14 3cob:A 355 53 0.0909 0.0338 0.2264 4.9 3cob:C, 1sdm:A
15 8exs:A 556 40 0.0909 0.0216 0.3000 6.5 8c0p:A, 8c0p:B, 8c0s:A, 8c0s:B, 8cf3:C, 8cf3:E, 8exp:A, 8exp:B, 8exq:B, 8exq:A, 8exr:B, 8exr:A, 8exs:B, 8ext:A, 8ext:B, 6o9w:B, 3q7z:A, 3q7z:B, 3q81:A, 3q81:B, 3q82:A, 3q82:B, 1xa1:A, 1xa1:B, 1xa1:C, 1xa1:D, 1xa7:A, 1xa7:B, 1xkz:A, 1xkz:B, 1xkz:C, 1xkz:D
16 1s4o:A 335 53 0.1212 0.0478 0.3019 6.6 1s4o:B, 1s4p:A, 1s4p:B
17 6rxt:UD 772 32 0.1061 0.0181 0.4375 7.1 6rxu:UD, 6rxv:UD, 6rxx:UD, 6rxy:UD, 6rxz:UD

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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