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BioLiP
>protein
FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKR
EAEYFQLPDLVKLLT

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ocp:B 99 96 1.0000 0.9596 0.9896 4.99e-64 6m8r:A, 6m8r:F, 6ocp:C, 6ocp:D, 6ocp:E, 6ocp:F, 6ocp:G, 6ocp:H, 6ocp:K, 6ocp:L, 6ocp:M, 6ocp:N
2 7e8e:D 459 68 0.2211 0.0458 0.3088 0.001 7e87:B, 7e87:A, 7e87:C, 7e87:D, 7e8e:B, 1nn7:A, 7ukg:A, 7ukg:B, 7ukg:C, 7ukg:D
3 6sga:FS 277 66 0.2632 0.0903 0.3788 0.002 6sga:FQ, 6sga:FR, 6sga:FU, 6sgb:FQ, 6sgb:FR, 6sgb:FU
4 2i2r:L 138 67 0.2105 0.1449 0.2985 0.002 2i2r:A, 2i2r:C, 2i2r:D, 2i2r:I, 2i2r:J, 2i2r:K, 2nz0:B, 2nz0:D, 1s1g:A, 1s1g:B
5 2i2r:B 124 67 0.2105 0.1613 0.2985 0.002
6 8quc:A 395 72 0.2526 0.0608 0.3333 0.003 8f1c:A, 8f1c:B, 8f1c:C, 8f1c:D, 8f1d:A, 8f1d:B, 8f1d:C, 8f1d:D, 7phi:C, 7phi:B, 7phi:D, 8quc:B, 8quc:D, 8quc:C, 8qud:A, 8qud:B, 8qud:C, 8qud:D
7 7ukh:A 203 68 0.2211 0.1034 0.3088 0.007 7ukh:B, 7ukh:C, 7ukh:D
8 5b46:A 627 61 0.2000 0.0303 0.3115 0.29 5b47:A
9 1t3q:B 786 35 0.1474 0.0178 0.4000 0.44 1t3q:E
10 7c98:A 309 57 0.2000 0.0615 0.3333 1.4 7c98:B, 7c98:C, 7c99:A, 7c99:B, 7c99:C, 7c9c:A, 7c9c:B, 7c9c:C, 7cgy:A, 7cgy:B, 7cgy:C, 8qqe:B, 8qqe:A, 8r2g:C, 8r2g:G, 8r2g:H, 8r2g:A, 8r2g:D, 8r2g:E, 8r2g:B
11 5juy:B 1234 73 0.2632 0.0203 0.3425 3.3 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
12 1i9g:A 264 52 0.1474 0.0530 0.2692 7.0
13 8osg:F 258 89 0.2737 0.1008 0.2921 7.7
14 4ttb:A 189 18 0.0842 0.0423 0.4444 7.7 4ttb:B
15 8iuf:C1 495 30 0.1368 0.0263 0.4333 8.1 8iuj:c1, 8iuj:C1
16 4ttc:A 220 18 0.0842 0.0364 0.4444 9.5 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
17 7mq8:NH 1066 54 0.1789 0.0159 0.3148 9.9 7mqa:NH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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