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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSDILVV
PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTFMVEGGG
SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE
AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP
HRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQ

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1r3q:A 357 356 0.9972 0.9944 0.9972 0.0 2q71:A, 1r3s:A, 1r3t:A, 1r3v:A, 1r3w:A, 1r3y:A
2 4ay8:A 340 355 0.2303 0.2412 0.2310 7.14e-09 4ay7:A, 4ay7:B, 4ay8:B
3 1yxm:B 283 99 0.0843 0.1060 0.3030 0.025
4 1wzn:A 244 80 0.0730 0.1066 0.3250 0.33 1wzn:B, 1wzn:C
5 1u2z:C 385 62 0.0478 0.0442 0.2742 0.42 7k6p:K, 7k6q:K, 1u2z:A, 1u2z:B
6 5f55:A 705 59 0.0534 0.0270 0.3220 0.70 5f54:A, 5f56:A, 6lrd:A
7 7rft:A 234 48 0.0393 0.0598 0.2917 1.2 7rft:B
8 7amv:K 708 33 0.0337 0.0169 0.3636 1.7 8c8h:K, 6rfl:K
9 3dhi:A 498 63 0.0449 0.0321 0.2540 2.3 3dhg:A, 3dhg:D, 3dhh:A, 3ge3:A, 3ge8:A, 3ge8:D, 3i5j:A, 3i63:A, 4p1b:A, 4p1b:D, 4p1c:A, 4p1c:D, 3q14:A, 3q2a:A, 3q3m:A, 3q3m:D, 3q3n:A, 3q3o:A, 3ri7:A, 3rmk:A, 3rmk:D, 5tds:A, 5tds:D, 5tdt:A, 5tdt:D, 5tdu:A, 5tdv:A, 5tdv:D
10 6lhr:C 344 101 0.0758 0.0785 0.2673 2.5 6lhr:A, 6lhr:B, 6lhr:D
11 7x0f:C 458 44 0.0478 0.0371 0.3864 2.7 7x0e:A, 7x0f:A, 7x0f:B, 7x0f:D, 7x17:A, 7x17:B, 7x17:C, 7x17:D
12 2rif:A 131 68 0.0730 0.1985 0.3824 3.2 2rif:B, 2rif:C, 2rif:D
13 8fi3:B 308 59 0.0562 0.0649 0.3390 4.8 8fi3:A
14 2bis:A 440 22 0.0337 0.0273 0.5455 5.9 2bis:C, 3fro:B, 3l01:A, 3l01:B
15 1bib:A 294 19 0.0309 0.0374 0.5789 7.5
16 2ewn:A 318 19 0.0309 0.0346 0.5789 8.2 2ewn:B, 1hxd:A, 1hxd:B, 4wf2:A
17 3baz:A 311 65 0.0562 0.0643 0.3077 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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