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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FNLKVVLVSFKQCLTDKGEVLLDHYIAGWKGLVRFLNSLGAVFSFISKDVVAKLQIMERLRSSPQSEHYTSLQSMVAYEV
SNKLVDMDHRHPHSGCRTVLRLHRALHWLQLFLDGLRTSSERTSTLCSEAYNATLANYHSWIVRQAVTVAFCALPSRKVF
LEAMNMESTEQAVEMLGEALPFIEHVYDISQKLYAEHSLLDLP

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4kbr:B 207 207 1.0000 0.9807 0.9807 1.19e-148 4kbr:A, 4kbr:C, 4kbr:D, 4kbr:F, 4kbr:G, 4kbr:H
2 4k80:A 209 207 0.7882 0.7656 0.7729 3.70e-118 4k84:A, 4k84:B, 4k85:A, 4k85:B, 4k85:C, 4k85:D, 4k8n:A, 4k8n:E, 4k8n:B, 4k8n:C, 4k8n:D, 4k8n:F, 4kf6:A, 4kf6:B, 4kf6:C, 4kf6:D, 4kf6:E, 4kf6:F
3 5kdi:A 211 197 0.2512 0.2417 0.2589 2.15e-12 5kdi:B
4 4nti:A 202 157 0.1872 0.1881 0.2420 5.75e-07 4nt2:A, 4ntg:A, 4ntg:B, 4nti:B, 4nto:A, 4nto:B, 4nto:C
5 4gxg:A 209 142 0.1872 0.1818 0.2676 6.89e-06 2bv7:A, 2euk:A, 2eum:A, 2evd:A, 2evl:A, 2evs:A, 2evs:E, 4gh0:A, 4ghp:A, 4ghs:A, 4ghs:B, 4gix:A, 4gjq:A, 4gjq:B, 4gvt:A, 4gxd:A, 4gxg:B, 4gxg:D, 4gxg:E, 4h2z:A, 3ric:A, 3rzn:A, 3s0i:A, 3s0k:A, 1sx6:A
6 4oon:A 502 67 0.0887 0.0359 0.2687 0.52
7 4kir:A 460 79 0.1330 0.0587 0.3418 1.1 4kir:B, 4kqn:A, 4kqn:B, 1yny:A, 1yny:B
8 6mkq:A 262 75 0.1281 0.0992 0.3467 1.6
9 7urg:A 401 49 0.1034 0.0524 0.4286 2.0 7urg:B
10 3sfw:A 461 79 0.1281 0.0564 0.3291 2.4 3sfw:B
11 8fpj:A 1345 39 0.0690 0.0104 0.3590 3.8
12 6d50:B 840 90 0.1034 0.0250 0.2333 4.3 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
13 3n6r:G 646 34 0.0640 0.0201 0.3824 4.5 3n6r:I, 3n6r:K
14 3n7x:A 299 51 0.0640 0.0435 0.2549 6.2
15 1bul:A 265 28 0.0493 0.0377 0.3571 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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