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BioLiP
>protein
FNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDL
LAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIEMDIKDFCTHE
VEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYA

The query sequence (length=223) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fjv:A 231 225 0.9955 0.9610 0.9867 3.45e-164 8cms:AAA, 4fjv:C, 5qio:A, 5qip:A, 5qiq:A, 5qir:A, 5qis:A, 5qit:A, 5qiu:A, 5qiv:A, 5qiw:A, 5qix:A, 5qiy:A, 5qiz:A
2 3zok:A 365 90 0.0942 0.0575 0.2333 0.36 3zok:B, 3zok:C, 3zok:D
3 1obh:A 762 82 0.1166 0.0341 0.3171 0.49
4 2bte:A 876 82 0.1166 0.0297 0.3171 0.50 2bte:D, 2byt:A, 2byt:D, 1h3n:A, 1obc:A, 2v0c:A, 2v0g:A, 2v0g:D
5 8aei:A 152 98 0.1256 0.1842 0.2857 0.99 8aei:B
6 8ebu:A 604 155 0.1256 0.0464 0.1806 1.4 8ebt:A, 8ebx:A, 8eby:A
7 7lbm:W 574 154 0.1256 0.0488 0.1818 1.7
8 6fh2:A 353 42 0.0673 0.0425 0.3571 2.1 6fh3:A, 6fh3:B
9 5eks:A 355 89 0.0942 0.0592 0.2360 2.2 5eks:B
10 4e6m:A 401 148 0.1345 0.0748 0.2027 3.1 4e6m:B, 4e6m:C, 4e6m:D, 4e6m:E, 4e6m:F, 4e6m:G, 4e6m:H, 2gl5:A, 2gl5:B
11 1rzr:G 332 67 0.0897 0.0602 0.2985 3.3 2jcg:A, 2nzu:G, 2nzv:G, 1rzr:C, 1rzr:A, 1rzr:D, 1sxg:B, 1zvv:A, 1zvv:B, 1zvv:G
12 5jze:A 159 25 0.0583 0.0818 0.5200 3.3 5jze:C
13 7ena:6 652 130 0.1076 0.0368 0.1846 3.4 7ad8:A, 8bvw:0, 8ebs:A, 8ebv:A, 8ebw:A, 7egb:6, 7egc:6, 7enc:6, 8gxq:HH, 8gxs:HH, 5ivw:V, 5iy6:V, 5iy7:V, 5iy8:V, 5iy9:V, 7nvr:7, 7nvv:7, 7nvw:7, 7nvx:7, 7nvy:7, 7nvz:7, 7nw0:7, 6o9l:7, 6ro4:A, 8wak:6, 8wal:6, 8wan:6, 8wao:6, 8wap:6, 8waq:6, 8war:6, 8was:6
14 3sqg:B 431 52 0.0583 0.0302 0.2500 3.4 3sqg:E, 3sqg:H
15 5lmg:B 321 57 0.0717 0.0498 0.2807 5.4 5lm5:A, 5lm5:B, 5lmf:B, 5lmf:A, 5lmg:A
16 7kl6:A 147 77 0.0807 0.1224 0.2338 5.8
17 7aqr:V 140 48 0.0538 0.0857 0.2500 6.9 7ar7:V, 7ar8:V, 7arb:V
18 5b43:A 1272 64 0.0942 0.0165 0.3281 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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