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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FNEPLNIVSHLNDDWFLFGDARSDCTYVENNGHPKLDWLDLDPKLCNSGRISAKSGNSLFRSFHFTDFYNYSGEGDQVIF
YEGVNFSPSHGFKCLANGDNKIWMGNKARFYARLYEKMAQYRSLSIVTVSYAYGGNAKPTSICKDNKLTLNNPTFISKES
NYADYYYVSEANFTLQGCDEFIVPLCVFNGHSRGSSSDPANTYYMDSQMYYNTVTGVFYGFNSTLDVGTTVQNPGLDLTC
SYLALSPGNYKAVSLEFLLSLPSKAICLLKPKRFMPVQVVDSRWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVH
HGDLYFRQLLSGLLYNVSCIAQQGAFLYNNVSSIWPVYGYGHCPTAANI

The query sequence (length=369) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5jil:A 369 369 1.0000 1.0000 1.0000 0.0 4zxn:A
2 4c7w:A 353 369 0.8347 0.8725 0.8347 0.0 4c7w:B
3 3cl5:A 358 367 0.5881 0.6061 0.5913 2.00e-161
4 3i1l:A 362 370 0.3144 0.3204 0.3135 3.67e-45 3i1l:B, 3i1l:C
5 3i26:D 369 365 0.3008 0.3008 0.3041 1.91e-41 3i27:D
6 5e62:A 424 350 0.2818 0.2453 0.2971 8.63e-30 5e62:C, 5e65:A, 5e65:C, 5e66:A
7 5ofb:B 541 58 0.0352 0.0240 0.2241 0.61 5of9:A, 5of9:B, 5ofa:B, 5ofa:A, 5ofb:A
8 6rd4:T 523 88 0.0461 0.0325 0.1932 2.2 6rd4:U, 6rd4:V, 6rd9:T, 6rd9:U, 6rd9:V, 6rdb:T, 6rdb:U, 6rdb:V, 6rdc:T, 6rdc:U, 6rdc:V, 6rde:T, 6rde:U, 6rde:V, 6rdg:T, 6rdg:U, 6rdg:V, 6rdh:T, 6rdh:U, 6rdh:V, 6rdi:T, 6rdi:U, 6rdi:V, 6rdj:T, 6rdj:U, 6rdj:V, 6rdk:T, 6rdk:U, 6rdk:V, 6rdl:T, 6rdl:U, 6rdl:V, 6rdm:T, 6rdm:U, 6rdm:V, 6rdn:T, 6rdn:U, 6rdn:V, 6rdo:T, 6rdo:U, 6rdo:V, 6rdp:T, 6rdp:U, 6rdp:V, 6rdq:T, 6rdq:U, 6rdq:V, 6rdr:T, 6rdr:U, 6rdr:V, 6rds:T, 6rds:U, 6rds:V, 6rdt:T, 6rdt:U, 6rdt:V, 6rdu:T, 6rdu:U, 6rdu:V, 6rdv:T, 6rdv:U, 6rdv:V, 6rdw:T, 6rdw:U, 6rdw:V, 6rdx:T, 6rdx:U, 6rdx:V, 6rdy:T, 6rdy:U, 6rdy:V, 6rdz:T, 6rdz:U, 6rdz:V, 6re0:T, 6re0:U, 6re0:V, 6re1:T, 6re1:U, 6re1:V, 6re2:T, 6re2:U, 6re2:V, 6re3:T, 6re3:U, 6re3:V, 6re4:T, 6re4:U, 6re4:V, 6re5:T, 6re5:U, 6re5:V, 6re6:T, 6re6:U, 6re6:V, 6re7:T, 6re7:U, 6re7:V, 6re8:T, 6re8:U, 6re8:V, 6re9:T, 6re9:U, 6re9:V, 6rea:T, 6rea:U, 6rea:V, 6reb:T, 6reb:U, 6reb:V, 6rec:T, 6rec:U, 6rec:V, 6red:T, 6red:U, 6red:V, 6ree:T, 6ree:U, 6ree:V, 6ref:T, 6ref:U, 6ref:V, 6rep:T, 6rep:U, 6rep:V, 6rer:T, 6rer:U, 6rer:V, 6res:T, 6res:U, 6res:V, 6ret:T, 6ret:U, 6ret:V, 6reu:T, 6reu:U, 6reu:V
9 6vvt:C 883 50 0.0379 0.0159 0.2800 3.1
10 5hl3:A 356 38 0.0461 0.0478 0.4474 4.7
11 7pua:DF 594 31 0.0379 0.0236 0.4516 9.5 6hiv:DF, 6hiw:DF, 6hiz:DF, 7pub:DF, 6sg9:DF, 6sgb:DF

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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