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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FNEFKTPQIDPIFDLYVAYGYVVSLIRGGAKEATLIPHGASYLIQTDVSNEEFRHGLVDALSSMLSLHIALAKLVSDADF
SAGANINNVYWDSVPRNLEKLMKDLEKKRSVKGTATIPITLMPSAGKYMLKHFGVQGGNPIKVDLLNYALAWVGFHYYTP
YIKYAKGDTTWIHIYQIAPVEEVDMISILSLKDLKMHLPHYYESNLDFLINRRLALLYHLLHSEALELFTEKEFVIHSYT
LERSGNNQAIRSFEEEEIGKLMDFLWKLKRRDFYHAIKFIDDLLKKATEGALALIDAIMNERLEGFYTALKLGKKAGVVS
SREIVAALEDIIC

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r2k:Y 333 333 1.0000 1.0000 1.0000 0.0 7tr8:C, 7tr9:C, 7tra:B
2 2vhf:A 341 65 0.0541 0.0528 0.2769 0.16 2vhf:B
3 2vqd:A 447 27 0.0450 0.0336 0.5556 0.22
4 6mfv:A 641 144 0.1441 0.0749 0.3333 0.55 6mfv:B, 6mfv:C, 6mfv:D
5 5ocs:A 369 27 0.0420 0.0379 0.5185 0.86 5ocs:C
6 6azy:A 810 59 0.0541 0.0222 0.3051 4.5 6d00:1, 6d00:2, 6d00:3, 6d00:4, 6d00:5, 6d00:6
7 6ntz:A 367 120 0.0871 0.0790 0.2417 8.0 3beb:A, 3bec:A, 5j8x:A, 3mzd:A, 3mze:A, 3mzf:A, 1z6f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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