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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLAVTKWFIST
LKSQYCSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFMLTVKQFG
HTMLDIKDESYLVTPPPLHIVELEGKSYIQSSTGLLCVIEFSGRGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSK
IIKANKKEESRLFYDAARIPAEHLNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS
WQRRWFKDFDYSVTPEEGALVPEKDDTFLKLASALNLSTKNAPSGTLVGDKEDRKEDLSSIHWRFQRELWDEEKEIVL

The query sequence (length=398) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3spw:A 398 398 1.0000 1.0000 1.0000 0.0 3spw:B
2 4jch:A 436 422 1.0000 0.9128 0.9431 0.0 4f4b:A, 4f4b:B, 4fes:A, 4fes:B, 4jch:B, 1zht:A, 1zhw:A, 1zhx:A, 1zhy:A, 1zhz:A
3 4ph7:D 407 354 0.2538 0.2482 0.2853 3.48e-26 4b2z:A, 4b2z:B, 4ph7:A, 4ph7:B, 4ph7:C
4 5h2d:A 418 312 0.2085 0.1986 0.2660 1.25e-16 5wvr:A
5 5zm8:A 386 343 0.2312 0.2383 0.2682 2.38e-10
6 5zm8:B 413 369 0.2538 0.2446 0.2737 2.39e-08
7 5zm5:A 398 365 0.2362 0.2362 0.2575 2.77e-07 5zm6:A, 5zm6:B, 5zm7:A
8 7dei:B 377 76 0.0779 0.0822 0.4079 4.78e-05 7dei:A
9 4inq:A 372 55 0.0528 0.0565 0.3818 0.067
10 6tmf:d 582 86 0.0578 0.0395 0.2674 0.43 3ozx:A, 3ozx:B
11 5an9:A 398 107 0.0704 0.0704 0.2617 0.81 5anb:A, 5anc:A, 6qkl:A
12 7k5b:B 4524 57 0.0452 0.0040 0.3158 1.1 8bx8:B, 7k58:B, 7kek:B
13 8azw:r 386 124 0.0854 0.0881 0.2742 4.2 8b2l:r3, 7qiw:E, 7qiz:E
14 8jj9:B 299 52 0.0352 0.0468 0.2692 4.4 8jj9:A
15 4ari:A 821 54 0.0452 0.0219 0.3333 7.0 4arc:A, 4as1:A, 8pot:A, 3zjt:A, 3zju:A, 3zjv:A
16 3zgz:D 867 54 0.0452 0.0208 0.3333 7.6 2ajh:A, 2ajh:B, 2aji:A, 2aji:B, 4aq7:A, 4aq7:D, 4cqn:A, 4cqn:D, 5omw:A, 5omw:D, 5on2:A, 5on2:D, 5on3:A, 5on3:D, 5onh:A, 5onh:D, 3zgz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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