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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FLIKPYEGESLSHFLGRFRRANHLSASGLGTLAGIGAIVARWERFHFNPRPSQQELEAIASVVEVDAQRLAQMLPPAGVG
MQHEPIRLCGACYAESPCHRIEWQYKSVWKCDRHQLKILAKCPNCQAPFKMPALWEDGCCHRCRMPFAEMAKLQK

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7svu:X 165 155 1.0000 0.9394 1.0000 7.41e-115 8bd4:S, 8bd4:R, 8bd4:T, 8bd5:Q, 8ea3:Q, 8ea4:Q, 7oxd:A, 8rdu:C, 8rkt:C
2 5xxb:W 127 58 0.0903 0.1102 0.2414 1.0
3 3n71:A 468 45 0.0774 0.0256 0.2667 1.4
4 8j78:I 651 53 0.0968 0.0230 0.2830 1.8 8j78:C, 8j7d:D, 8j7d:F, 8j7d:I, 8j7d:L, 8jaw:A, 8jaw:C, 8jaw:E, 8jaw:F, 8jaw:H, 8jaw:K, 8k2v:A, 8k2v:B, 8k2v:C, 8k2v:D, 8k2v:E, 8k2v:F
5 7u5d:I 387 37 0.0839 0.0336 0.3514 2.4 7u5e:I
6 1hyu:A 521 68 0.1032 0.0307 0.2353 2.7 1fl2:A, 4o5q:A, 4o5u:A, 4xvg:A, 4ykf:A, 4ykg:A
7 4i8v:A 477 56 0.1226 0.0398 0.3393 3.0 6dwm:A, 6dwm:B, 6dwm:C, 6dwm:D, 6dwn:A, 6dwn:B, 6dwn:C, 4i8v:B, 4i8v:C, 4i8v:D, 6o5y:A, 6o5y:B, 6o5y:C, 6o5y:D, 6udl:A, 6udl:B, 6udl:C, 6udl:D, 6udm:A, 6udm:B, 6udm:C, 6udm:D
8 6dwn:D 453 56 0.1226 0.0419 0.3393 3.3
9 7r7j:B 574 72 0.1290 0.0348 0.2778 3.9 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
10 8fcu:P 327 44 0.0903 0.0428 0.3182 5.4 8fcv:P, 8ff4:P
11 2hi4:A 480 56 0.1161 0.0375 0.3214 5.7
12 4yzr:A 388 32 0.0710 0.0284 0.3438 7.1
13 4c30:F 632 67 0.1226 0.0301 0.2836 9.5 4c30:A
14 4c2u:A 658 67 0.1226 0.0289 0.2836 9.5 4c2t:A, 4c2t:B, 4c2t:C, 4c2t:D, 4c2u:D, 4c30:I, 4c30:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218