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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FLGPAVIASIAYMDPGNFATNIEGGARYGYSLLWVILAANLMAMVIQNLSANLGIASGRNLPELIRERWPRPLVWFYWIQ
AELVAMATDLAEFLGAALAIQLLTGLPMFWGAVVTGVVTFWLLNLQKRGTRPLELAVGAFVLMIGVAYLVQVVLARPDLA
AVGAGFVPRLQGPGSAYLAVGIIGATVMPHVIYLHSATTEEKRRLVRLNRVDVIAAMGLAGLINMSMLAVAAATFHGKNV
ENAGALTTAYQTLTPLLGPAASVLFAVALLASGLSSSAVGTMAGDVIMQGFMGFHIPLWLRRLITMLPAFIVILLGMDPS
SVLILSQVILCFGVPFALVPLLLFTARRDVMGALVTRRSFTVIGWVIAVIIIALNGYLLWELLGG

The query sequence (length=385) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e6n:A 398 394 0.9948 0.9623 0.9721 0.0 8e60:A, 8e6h:A, 8e6i:A, 8e6l:A
2 5m95:A 395 395 0.3870 0.3772 0.3772 3.85e-87 5m95:C
3 5m87:A 494 421 0.3792 0.2955 0.3468 1.33e-62 6tl2:A
4 6dgm:B 382 108 0.0675 0.0681 0.2407 0.15 6dgm:A, 5u9z:A, 5u9z:B, 5wcx:A, 5wcx:B
5 5azb:A 284 52 0.0442 0.0599 0.3269 2.4 5azc:A
6 8fnc:8 516 40 0.0390 0.0291 0.3750 2.6 8fnf:8, 8fni:8, 8fnk:8
7 5u07:D 260 147 0.0909 0.1346 0.2381 8.8 5u0a:D
8 8u51:A 267 24 0.0338 0.0487 0.5417 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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