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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FKTDIEIAQEANPQDIRDIAKKINLSEDDIELYGKYKAKIDYNVLNRTKSRAGKLILTTAINPTPAGEGKTTTSIGVADA
LAKLGKNVIAALREPSMGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMHAIGAANNLLAAMLDNHVYQTNSLNINPKRI
TWRRCVDMNDRQLRNVVDGLGKKVDGVTREDGFDITVASEVMAAFCLSNNISELKENLGNIVVAYNYSGKPVTARDLNAH
GAMAAILKDALKPNLVQTLEGTPAILHGGPFANIAHGCNSIIATKMGMHMADYVVTEAGFGADLGAEKFLDIKCRKAGIR
PDAVIIVATVRALKYNGGVAKDQLNNENLEALEKGLPNLLKHIENITQVYKIPAVVAINRFPLDTDAELALVRSKCEELG
VKVALSEVWANGGEGGIEVANEVLKLIEEGENNFEYCYEEDMTIKEKLNAIATKIYGADGVNYTKEANKQIAELEELGFG
NLPVCVAKTQYSLSDDQTKLGRPTGFTIEVRQANISAGAGFVVVMTGEIMKMPGLPKLPAAERIDVDENGKISGLF

The query sequence (length=556) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xzo:C 561 556 1.0000 0.9911 1.0000 0.0 7xzo:A, 7xzo:B, 7xzo:D, 7xzp:A, 7xzp:B
2 4iok:A 557 555 0.6565 0.6553 0.6577 0.0 1fp7:A, 1fpm:A, 1fpm:B, 4iok:B, 4iol:A, 4iol:B, 4jjz:A, 4jjz:B, 4jki:A, 3qus:A, 3qus:B
3 6u1q:A 208 45 0.0342 0.0913 0.4222 0.003 6u1q:B
4 1ion:A 243 225 0.0989 0.2263 0.2444 0.008
5 2bej:A 245 80 0.0486 0.1102 0.3375 0.41 2bek:A, 2bek:B, 2bek:C, 2bek:D
6 4o8m:A 303 105 0.0540 0.0990 0.2857 0.63 4o8m:B, 4o8m:C, 4o8m:D, 4o8m:E, 4o8m:F, 4o8m:G, 4o8m:H
7 1g3q:A 237 225 0.1007 0.2363 0.2489 1.0 1g3r:A
8 8bx8:C 3947 50 0.0360 0.0051 0.4000 2.7 7k58:C, 7k5b:C, 7kek:C
9 5u1g:D 211 49 0.0324 0.0853 0.3673 3.3 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
10 2v8t:A 302 48 0.0306 0.0563 0.3542 3.8 6kk8:A, 6kk8:B, 2v8t:B, 2v8u:A, 2v8u:B
11 3o3l:A 315 56 0.0342 0.0603 0.3393 4.9 3mmj:A, 3mmj:B, 3moz:A, 3moz:B, 3o3l:B, 1u25:A, 1u25:C, 1u26:A, 1u26:B, 4wty:A, 4wty:B, 4wu2:A, 4wu2:B
12 8qpt:B 289 57 0.0324 0.0623 0.3158 5.6 8qpt:A
13 5w3x:C 342 122 0.0576 0.0936 0.2623 6.9 5w3t:A, 5w3t:B, 5w3t:C, 5w3t:D, 5w3x:A, 5w3y:A, 5w3y:B, 5w3y:C, 5w3y:D, 5w40:A, 5w40:B, 5w40:C, 5w40:D
14 3tsc:A 271 40 0.0216 0.0443 0.3000 7.7 3tsc:B, 3tsc:C, 3tsc:D
15 4y0u:A 243 80 0.0324 0.0741 0.2250 8.0 7vvi:A, 7vx3:A, 7vx6:A, 4y0u:B, 4y0u:C, 4y0u:D
16 3oth:A 395 86 0.0450 0.0633 0.2907 8.0 3otg:A, 3oth:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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