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BioLiP
>protein
FKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1mt1:E 50 41 1.0000 0.8200 1.0000 4.61e-23 1n13:E, 2qqc:E, 2qqd:D
2 2qqd:C 159 41 0.9756 0.2516 0.9756 1.22e-21 1mt1:A, 1mt1:F, 1mt1:B, 1mt1:C, 1mt1:G, 1mt1:J, 1mt1:H, 1mt1:K, 1n13:B, 1n13:C, 1n13:D, 1n13:A, 1n13:F, 1n13:H, 1n13:K, 1n13:G, 1n13:J, 1n13:I, 1n13:L, 2qqc:B, 2qqc:C, 2qqc:A, 2qqc:F, 2qqc:D, 2qqc:G, 2qqc:J, 2qqc:I, 2qqc:L, 2qqc:H, 2qqc:K, 2qqd:A, 2qqd:E, 2qqd:B
3 1fsu:A 475 22 0.2439 0.0211 0.4545 0.84
4 3pgb:A 740 38 0.3659 0.0203 0.3947 0.90
5 7dbe:B 332 24 0.2439 0.0301 0.4167 5.6 7dbe:A, 7dbe:C, 7dbe:D, 7wud:B, 7wud:A, 7wud:C, 7wud:D
6 1w7c:A 737 22 0.2683 0.0149 0.5000 5.9 1n9e:A, 1n9e:B, 1n9e:C, 1n9e:D, 1rky:A
7 4bts:AG 192 31 0.2927 0.0625 0.3871 8.1 4bts:BG, 4bts:CG, 4bts:DG, 3j0l:T, 3j0o:T, 4v5o:AG, 4v5o:BG
8 4g89:A 233 35 0.3659 0.0644 0.4286 8.8 4g89:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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