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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FKFTAQQHVYDINGVKVGGQPGEYPTVLIGSIFYRGHKIVSDGQKGIFDKDAAKALLDQEAELSAETGNPFIIDVLGESV
EALTKYVEFILENTTAPFLLDSISPDVRVGALKNLGKDPEIQKRLIYNSIEEHYTEEELAAIKEAGLKTAVILAFSKKAL
KPNARIDLLQGKDDKEGLIAAAKRAGIEQFLVDPGVLDVASNSWTTEAINVVKEQFGYPGGCAPSNAVYLWKKMRSKGTP
FFEVAGAAVFTYPITQGADFILYGPMMNAPWVYRAIATTDAMIAYNNKLTGVKMGTTEHPLLKIF

The query sequence (length=305) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sj8:A 305 305 1.0000 1.0000 1.0000 0.0 6sj8:B, 6sjn:A, 6sjo:A, 6sjr:A, 6sjr:B, 6sjs:A, 6sjs:B, 6sk4:A, 6sk4:B, 6sk4:C, 6sk4:D
2 7qa8:B 299 49 0.0525 0.0535 0.3265 0.61 7ad3:B, 7ad3:A, 7qa8:A, 7qb9:A, 7qb9:B, 7qbc:A, 7qbc:B, 7qbi:A, 7qbi:B
3 8v9l:x 387 62 0.0721 0.0568 0.3548 2.6 7vok:A, 7vok:B, 7vok:C, 7vok:D
4 6tfx:B 494 50 0.0492 0.0304 0.3000 3.9 6tfq:A, 6tfq:B, 6tfs:A, 6tfs:B, 6tfx:A
5 8g3h:A 841 38 0.0426 0.0155 0.3421 4.9
6 8jcu:3 765 45 0.0623 0.0248 0.4222 6.1 6b7h:A, 5cnk:A, 5cnm:A, 8jcv:3, 8jcw:3, 8jcx:3, 8jcy:3, 8jcz:3, 8jd0:3, 8jd1:3, 8jd2:3, 8jd3:3, 3sm9:A, 8tr0:A, 7wih:A, 7wih:B, 4xar:A
7 8gy1:A 169 44 0.0426 0.0769 0.2955 6.6 7emk:A, 8hct:A
8 7f4v:aB 725 118 0.0951 0.0400 0.2458 6.9 7f4v:bB, 7f4v:cB
9 9bry:c 203 30 0.0361 0.0542 0.3667 7.3
10 5anz:A 375 36 0.0393 0.0320 0.3333 7.9 5ao7:A, 5ao8:A
11 4ipi:A 351 63 0.0689 0.0598 0.3333 8.0 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A
12 1oqj:A 90 24 0.0328 0.1111 0.4167 9.1 1oqj:B
13 1dgp:A 290 67 0.0590 0.0621 0.2687 9.6 1dgp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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