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BioLiP
>protein
FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNE

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3f1i:S 77 77 1.0000 1.0000 1.0000 2.31e-50
2 4p53:A 360 37 0.1948 0.0417 0.4054 0.13
3 5e02:A 964 60 0.2338 0.0187 0.3000 0.80
4 8rmq:B 694 42 0.1299 0.0144 0.2381 4.1 6tu5:BBB, 6tu5:EEE
5 8tjc:B 336 26 0.1429 0.0327 0.4231 4.4 7jhi:A, 7jhi:C, 7jhl:A, 7jhl:B, 7jhm:A, 7jhm:B, 7jhn:A, 7jho:A, 7jho:B, 8sz3:A, 8sz3:B, 8tic:A, 8tic:B, 8tic:C, 8tic:D, 8tjc:A, 8tjc:C, 8tjc:D, 6wmm:A, 6wmm:B, 6wmn:A, 6wmn:B, 6wmn:C, 6wmn:D, 6wmo:A, 6wmo:B
6 4il2:B 404 29 0.1688 0.0322 0.4483 5.7 4e4f:A, 4e4f:D
7 4cv5:B 260 38 0.1429 0.0423 0.2895 6.0
8 2uz3:B 207 37 0.1429 0.0531 0.2973 6.4 2b8t:A, 2b8t:B, 2b8t:C, 2b8t:D, 2uz3:A, 2uz3:C, 2uz3:D
9 8jgw:A 500 32 0.1429 0.0220 0.3438 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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