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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FHSGGVAECEGCHTMHNSLGGAVMNSATAQFTTGPMLLQGATQSSSCLNCHQHAGDTGPSSYHISTAEADMPAGTAPLQM
TPGGDFGWVKKTYTWNVRGLNTSEGERKGHNIVAGDYNYVADTTLTTAPGGTYPANQLHCSSCHDPHGKYRRFVDGSIAT
TGLPIKNSGSYQNSNDPTAWGAVGAYRILGGTGYQPKSLSGSYAFANQVPAAVAPSTYNRTEATTQTRVAYGQGMSEWCA
NCHTDIHNSAYPTNLRHPAGNGAKFGATIAGLYNSYKKSGDLTGTQASAYLSLAPFEEGTADYTVLKGHAKIDDTALTGA
DATSNVNCLSCHRAHASGFDSMTRFNLAYEFTTIADASGNSIYGTDPNTSSLQGRSVNEMTAAYYGRTADKFAPYQRALC
NKCHAKD

The query sequence (length=407) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ef8:A 407 407 1.0000 1.0000 1.0000 0.0 6ef8:B, 6ef8:C, 6ef8:D, 6ef8:E, 6ef8:F, 6ef8:G, 6nef:A
2 6xkw:p 254 151 0.0983 0.1575 0.2649 0.31 6xkx:p, 6xkz:p
3 7nnl:B 682 93 0.0590 0.0352 0.2581 0.37 2a00:A, 2a29:A, 7bgy:B, 7bh1:B, 7bh2:B, 6hra:B, 6hrb:B, 7lc3:B, 7lc6:B, 5mrw:B, 5mrw:F, 5mrw:J, 7nnp:B, 7zrd:B, 7zre:B, 7zrg:B, 7zrh:B, 7zri:B, 7zrj:B, 7zrk:B, 7zrl:B, 7zrm:B
4 2a3l:A 616 96 0.0639 0.0422 0.2708 0.42
5 3jsz:A 520 59 0.0516 0.0404 0.3559 0.85 3jt1:A, 2wzg:A
6 4n4j:A 497 72 0.0516 0.0423 0.2917 0.89 4n4k:A, 4n4l:A, 4n4m:A, 4rwm:A
7 2wzf:A 515 59 0.0516 0.0408 0.3559 1.6
8 3gri:B 423 116 0.0688 0.0662 0.2414 1.7 3gri:A
9 8hh1:D 471 74 0.0565 0.0488 0.3108 2.6 8hh1:E, 8hh1:F, 8hh2:D, 8hh2:E, 8hh2:F, 8hh3:D, 8hh3:E, 8hh3:F, 8hh4:D, 8hh4:E, 8hh4:F, 8hh5:D, 8hh5:E, 8hh5:F, 8hh6:D, 8hh6:E, 8hh6:F, 8hh7:D, 8hh7:F, 8hh8:D, 8hh8:F, 8hh9:D, 8hh9:F, 8hha:D, 8hha:F, 8hhb:D, 8hhb:F, 8hhc:D, 8hhc:F, 7l1q:D, 7l1q:E, 7l1q:F, 7l1r:D, 7l1r:E, 7l1r:F, 7l1s:D, 7l1s:F, 6n2y:E, 6n2y:F, 6n2z:F, 6n2z:D, 6n30:D, 6n30:E, 8spw:D, 8spw:E, 8spx:D, 8spx:E, 8spx:F, 8u1h:D, 8u1h:F, 4xd7:F, 7xkp:F, 7xkq:D, 7xkq:E, 7xkq:F, 7xkr:D, 7xkr:E, 7xkr:F
10 3zg8:B 458 33 0.0344 0.0306 0.4242 7.5 3zg9:B, 3zga:B
11 6z1p:Az 237 43 0.0369 0.0633 0.3488 7.6
12 8rv0:Y 495 34 0.0418 0.0343 0.5000 8.4 8rvm:YYY, 8rxu:AAA, 8rxu:MMM, 8rxu:YYY
13 3ki9:A 467 85 0.0516 0.0450 0.2471 9.0
14 3ucp:A 800 55 0.0393 0.0200 0.2909 9.9 3ufh:A, 3ufk:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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