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BioLiP
>protein
FHPYNTLGLATQSAMVGLGAGVVAAAARNSLALTTFSKSGGVVTIFTGASIAYVFTYCSAANLRERKDGWNHMWAGAATG
AVLGARTKLVPAFIGWTVLCGAACGLFGWTGARFNADRKASLEQSPKGFVQEDAHQTFWEVVHRRPLSLTVEQLGEGRGI
NAVPIATATEAP

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rfq:J 179 178 1.0000 0.9609 0.9663 1.21e-122 7o6y:J, 7o71:J, 6rfr:J, 6y79:J
2 7zme:J 186 165 0.3023 0.2796 0.3152 4.56e-16 7zmg:J, 7zmh:J
3 5gup:V 140 46 0.1163 0.1429 0.4348 0.014 7vc0:V, 7w2y:V, 7w4e:V, 7w4j:V
4 3oti:A 379 94 0.1570 0.0712 0.2872 2.9 3oti:B
5 2dcm:A 662 73 0.1163 0.0302 0.2740 3.5 2eep:A, 2z3z:A
6 6sga:F7 662 39 0.0988 0.0257 0.4359 3.8 7pua:F7, 7pub:F7, 6sgb:F7
7 7a4p:L 140 64 0.1047 0.1286 0.2812 5.7
8 5a0t:A 454 39 0.0640 0.0242 0.2821 6.0 5a0t:B, 5a0v:A, 5a0v:B
9 1jro:B 760 51 0.1047 0.0237 0.3529 6.3 1jro:D, 1jro:F, 1jro:H, 1jrp:B, 1jrp:D, 1jrp:F, 1jrp:H, 2w3r:B, 2w3r:D, 2w3r:F, 2w3r:H, 2w3s:B, 2w3s:D, 2w3s:F, 2w3s:H, 2w54:B, 2w54:D, 2w54:F, 2w54:H, 2w55:B, 2w55:D, 2w55:F, 2w55:H
10 2xpy:A 628 39 0.0756 0.0207 0.3333 8.2 2xpz:A, 2xq0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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