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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FGRKVPSNAKSQHNFSVIPSANIQRSVFNRSSGYKTTFDAGYLIPVFLDEALPGDTFHLKTSVLARLSTPVVPFMDNLRL
DIQYFSVPYRLVWDNWQKFNGEQKNPGDSTDYLIPQIKAPAGGFPVGSLADYFGVPTGVENISVSALPFRAYNLIYNEWY
RDENLINSAPLPLGDEEETGLANFPLRKRAKRHDYFTSALPWPQKGEGVEIGLGVPPSEGGEVVDNLTINSLRQAFQLQR
LLERDARGGTRYIEIIRSHFGVISPDARVQRPEYLGSGSFDININPVLQNSATTDASPQGNLAAYGVSGGVNRGFSHSFV
EHCFVIGLVSVRADLTYQQGIPRMFSRQTRFDFYWPALAHLGEQAILNKEIYAQGNAKDDEVFGYQERYAEYRYRPSQIT
GKLRSTDPQSLDVWHLAQRFDSLPALNQEFIEENPPMKRVLAVQDEPQFIMDAFFDLKCVRPMPVYSVPGLIDHF

The query sequence (length=475) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8des:A 475 475 1.0000 1.0000 1.0000 0.0
2 6xlp:A 586 81 0.0526 0.0427 0.3086 1.5
3 3au0:A 339 115 0.0653 0.0914 0.2696 2.9 3asw:A, 3at0:A, 4f1z:A, 4f20:A, 4f24:A, 4f27:A
4 5jpq:k 182 85 0.0442 0.1154 0.2471 3.4 5oql:Q
5 6f2p:A 1040 37 0.0274 0.0125 0.3514 4.3
6 4i4t:F 357 75 0.0463 0.0616 0.2933 5.1 8a0l:F, 7au5:F, 8b7a:F, 8b7c:F, 8bde:F, 5bmv:F, 8c0f:F, 5c8y:F, 5ca0:F, 5ca1:F, 5cb4:F, 7cda:F, 7ce6:F, 7ce8:F, 7cek:F, 7cld:F, 8cld:F, 8clg:F, 7cnm:F, 7cno:G, 7dad:F, 7dae:F, 7daf:F, 7db9:F, 7dbb:F, 7dbc:F, 7dbd:F, 7dp8:F, 7e4p:F, 7e4r:F, 7e4z:F, 6eg5:F, 7emj:F, 7en3:F, 7exc:F, 5ezy:F, 6fii:F, 6fjf:F, 6fjm:F, 6fkj:F, 6fkl:F, 5h74:F, 5h7o:F, 4i55:F, 6i5c:F, 4ihj:F, 5j2u:F, 7jfr:F, 5jh7:F, 8jjb:F, 8jjc:F, 5jvd:F, 6k9v:F, 6knz:F, 5kx5:F, 7l05:F, 5la6:F, 6lsm:F, 6lsn:F, 5lxs:F, 5lxt:F, 5m8d:F, 6n47:F, 5nfz:F, 5ng1:F, 5njh:F, 6nng:F, 4o4h:F, 4o4i:F, 5ov7:F, 8r67:F, 8riv:F, 8riw:F, 5s4l:F, 5s4m:F, 5s4n:F, 5s4o:F, 5s4p:F, 5s4q:F, 5s4r:F, 5s4s:F, 5s4t:F, 5s4u:F, 5s4v:F, 5s4w:F, 5s4x:F, 5s4y:F, 5s4z:F, 5s50:F, 5s51:F, 5s52:F, 5s53:F, 5s55:F, 5s56:F, 5s57:F, 5s58:F, 5s59:F, 5s5a:F, 5s5b:F, 5s5c:F, 5s5d:F, 5s5e:F, 5s5f:F, 5s5g:F, 5s5h:F, 5s5i:F, 5s5j:F, 5s5k:F, 5s5l:F, 5s5m:F, 5s5n:F, 5s5o:F, 5s5p:F, 5s5q:F, 5s5r:F, 5s5s:F, 5s5t:F, 5s5u:F, 5s5v:F, 5s5w:F, 5s5x:F, 5s5y:F, 5s5z:F, 5s60:F, 5s61:F, 5s62:F, 5s63:F, 5s64:F, 5s65:F, 5s66:F, 5s67:F, 5sb3:F, 5sb4:F, 5sb5:F, 5sb7:F, 5sb8:F, 5sba:F, 5sbb:F, 5sbc:F, 5sbd:F, 5sbe:F, 4tuy:F, 4tv8:F, 4tv9:F, 7vmk:F, 8wd0:F, 5xlt:F, 5xlz:F, 5xp3:F, 6y4m:F, 6y4n:F, 6y6d:F, 5yl2:F, 5ylj:F, 5yls:F, 5yz3:F, 7z2n:F, 7z2p:F, 7z7d:F, 8zb8:F, 4zhq:F, 4zi7:F, 4zol:F
7 6pop:A 475 28 0.0253 0.0253 0.4286 5.8 6pop:B, 6pop:C, 6pop:D, 6pop:E, 6pop:F
8 1g6i:A 510 77 0.0442 0.0412 0.2727 6.6
9 6fah:B 262 48 0.0232 0.0420 0.2292 7.2 6fah:F
10 8gm4:A 462 36 0.0274 0.0281 0.3611 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218