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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FGPETIIHGDCIEQMNALPEKSVDLIFADPPYNLQLSFAAYDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVGVAVQD
LGFWILNDIVWRKSNPMPNFKGTRFANAHETLIWASKSQNAKRYTFNYDALKMANDEVQMRSDWTIPLCTGEERIKGADG
QKAHPTQKPEALLYRVILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEHAKARIAKVVPIAPEDLDVMG
SKRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGSITVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAP
IDVLRAQVRAG

The query sequence (length=331) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pbd:B 331 331 1.0000 1.0000 1.0000 0.0
2 6pbd:A 350 354 0.9789 0.9257 0.9153 0.0
3 1g60:A 238 231 0.2236 0.3109 0.3203 3.27e-28 1g60:B
4 5hfj:C 204 227 0.2296 0.3725 0.3348 2.48e-27 5hfj:A, 5hfj:B, 5hfj:D, 5hfj:E, 5hfj:F, 5hfj:G, 5hfj:H
5 9c3s:A 250 241 0.2024 0.2680 0.2780 4.31e-22 9c3s:B, 9c3s:C, 9c3s:D, 9c3t:A, 9c3t:B, 9c3t:C, 9c3t:D, 9c3u:A, 9c3u:B, 9c3u:C, 9c3u:D, 8urk:A, 8urk:B, 8urk:C, 8urk:D
6 1nw8:A 272 244 0.2085 0.2537 0.2828 1.98e-21 1eg2:A, 1nw5:A, 1nw6:A, 1nw7:A
7 8s9o:A 230 219 0.1903 0.2739 0.2877 1.53e-16 8s9n:A, 8s9o:B
8 1boo:A 282 248 0.2054 0.2411 0.2742 1.63e-15
9 2zif:B 243 243 0.2024 0.2757 0.2757 4.59e-14 2zif:A
10 8s9m:A 241 241 0.1903 0.2614 0.2614 9.19e-13
11 6k0w:D 435 305 0.2175 0.1655 0.2361 5.85e-04 6k0w:C
12 7dsu:B 420 59 0.0634 0.0500 0.3559 0.054 7dsu:A
13 6k0w:B 499 91 0.0816 0.0541 0.2967 0.11
14 6k0w:B 499 65 0.0604 0.0401 0.3077 4.2
15 6k0w:A 528 91 0.0816 0.0511 0.2967 0.14
16 5e72:A 323 75 0.0725 0.0743 0.3200 0.42
17 5e72:A 323 96 0.0634 0.0650 0.2188 1.5
18 3cjt:A 254 80 0.0816 0.1063 0.3375 0.69 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
19 4pca:A 221 60 0.0453 0.0679 0.2500 0.72 4oa5:A, 4oa5:B, 4oa5:C, 4oa5:D, 4oa5:E, 4oa5:F, 4pca:B, 4pca:C, 4pca:D, 4pcl:A, 4pcl:B
20 4zcf:A 616 162 0.1329 0.0714 0.2716 0.73 4zcf:B
21 5xj2:A 454 77 0.0665 0.0485 0.2857 0.84 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
22 4c7y:A 907 102 0.0816 0.0298 0.2647 1.7 4c7z:A, 4c80:A, 3fah:A, 3fc4:A, 3l4p:A, 1sij:A, 4us8:A, 4us9:A, 4usa:A, 1vlb:A
23 1djs:B 135 18 0.0272 0.0667 0.5000 4.4 1afc:A, 1afc:B, 1afc:C, 1afc:D, 1afc:E, 1afc:F, 1afc:G, 1afc:H, 2afg:A, 2afg:B, 2afg:C, 2afg:D, 1axm:A, 1axm:B, 1axm:E, 1axm:C, 1axm:F, 1axm:D, 2axm:B, 2axm:A, 3cu1:B, 3cu1:D, 1e0o:C, 1e0o:A, 2erm:A, 1hkn:C, 1hkn:D, 2j3p:A, 2j3p:B, 3jut:A, 3jut:B, 3k1x:A, 3k1x:B, 2k8r:A, 3ojv:B, 3ojv:A, 1rml:A, 3ud7:B, 3ud8:A, 3ud9:B, 3uda:B, 2uus:A
24 3i9f:B 169 88 0.0755 0.1479 0.2841 4.4 3i9f:A
25 2zsm:A 425 90 0.0665 0.0518 0.2444 6.6 2epj:A, 2zsl:A, 2zsm:B, 2zsm:C
26 1x9q:A 231 54 0.0393 0.0563 0.2407 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218