Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTA
KQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ont:D 126 126 1.0000 1.0000 1.0000 2.53e-93 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
2 4e0s:B 898 117 0.2698 0.0379 0.2906 0.066 7nyc:B, 7nyd:B
3 3t5o:A 871 117 0.2698 0.0390 0.2906 0.067
4 4a5w:B 871 117 0.2698 0.0390 0.2906 0.069
5 2uwn:A 187 103 0.1905 0.1283 0.2330 0.073 2v8e:A, 7zjm:B
6 2uwn:A 187 53 0.1429 0.0963 0.3396 4.5 2v8e:A, 7zjm:B
7 7aoe:B 1174 80 0.1667 0.0179 0.2625 0.21 7aoc:B, 7aod:B, 7aod:N
8 8am6:AAA 547 44 0.1349 0.0311 0.3864 0.28 8am3:AAA, 8am3:BBB, 8am6:BaB, 8am8:BBB, 8am8:AAA
9 7mwz:D 301 56 0.1429 0.0598 0.3214 0.30
10 4wqm:A 326 59 0.1508 0.0583 0.3220 0.43
11 7aih:U 92 65 0.1667 0.2283 0.3231 1.7 7ane:U
12 2xwb:F 714 115 0.2698 0.0476 0.2957 2.1 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
13 1ckl:A 126 26 0.0873 0.0873 0.4231 2.4 1ckl:B, 1ckl:D, 1ckl:E, 1ckl:F, 2o39:C, 2o39:D
14 7rzw:B 864 33 0.0873 0.0127 0.3333 2.4 7rzw:A
15 3mse:B 168 33 0.0873 0.0655 0.3333 4.5
16 6yxx:E9 200 54 0.1508 0.0950 0.3519 4.6
17 2jrp:A 81 27 0.0873 0.1358 0.4074 5.8
18 6nbe:N 186 39 0.0952 0.0645 0.3077 8.2 6nas:N, 6nbw:N
19 5f7j:B 291 30 0.0873 0.0378 0.3667 9.6 5f76:A, 5f76:B, 5f76:C, 5f77:A, 5f77:B, 5f77:C, 5f7j:A, 5f7j:D, 5f7j:E, 5f7o:A, 5f7o:B, 5f7x:A, 5f7x:B, 5f7x:C, 5fak:A, 5fak:B, 5fak:D, 5fak:E, 4l5a:A, 4l5a:C, 4l5a:B, 4l5a:D, 4l5a:E, 4l5a:F, 4l5c:A, 4l5c:B, 4l5c:C, 4l5c:D, 4l5c:E, 4l5c:F, 4l6i:A, 4l6i:B, 4l6i:D, 4l6i:E
20 8tgt:C 70 59 0.1190 0.2143 0.2542 9.7

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218