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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FGIQTGDAVASTITVFQALSIDDQLAVLWYAYTEMGRSITPAATGAARLQLAEGLLNQIKQMSHAEQLQVMRDLAAKNNT
QVSRSYGILSNNTKLAFWYELSELMVKGFVVPVPTDYKISRDGSQVLEALKGLDFGQQITVLRKVVADMGVDPLA

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qx5:A 158 155 1.0000 0.9810 1.0000 4.29e-113 8qx5:B
2 7ytf:A 309 152 0.5355 0.2686 0.5461 4.81e-55
3 7qd1:A 311 148 0.5161 0.2572 0.5405 3.12e-53 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
4 6pq1:A 320 149 0.5161 0.2500 0.5369 5.11e-52
5 8pyh:B 319 150 0.4968 0.2414 0.5133 1.56e-50 8pyh:A
6 8a0h:A 324 144 0.4968 0.2377 0.5347 2.39e-50
7 5ui2:A 316 147 0.4710 0.2310 0.4966 3.56e-48 5ui2:B
8 7ekr:B 309 148 0.4903 0.2460 0.5135 9.68e-48 7ekr:A
9 5hgr:A 315 147 0.4968 0.2444 0.5238 2.84e-47 5hgr:B
10 7zsg:1 314 144 0.4645 0.2293 0.5000 1.33e-45 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
11 8pzk:A 300 147 0.4387 0.2267 0.4626 1.05e-41
12 5fcx:A 139 146 0.4129 0.4604 0.4384 6.35e-41 5fcx:B
13 6mcj:B 145 144 0.2839 0.3034 0.3056 2.72e-24 6mcj:A
14 3w1k:B 452 44 0.0903 0.0310 0.3182 2.4 3w1k:A, 3w1k:C, 3w1k:D, 3w1k:E
15 3guz:B 167 19 0.0774 0.0719 0.6316 5.5 3guz:A
16 4k9d:A 338 48 0.1032 0.0473 0.3333 8.3 4k9d:B, 4k9d:C, 4k9d:D, 4k9d:E, 4k9d:F, 4k9d:G, 4k9d:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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