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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FGAGPAAMAKEVIEATAKAVNNFWEGLSILEISHRSKEWINVMNETKALMKEVMDIPEGYEILFFGGGASLQFLMVAMNL
LNKKACYLDTGVWASKAIKEAENIGEVKIIGTSKDKNYTYIPEYQIPSDYDYFHITTNNTIYGTEIRKDIESPIPLVADM
SSDILSKPIDISKYSLIYAGAQKNCGAAGVTIVIIKKEILGKVQRKIPIILDYQVHILNNSMYNTPPVISIFTVNQTLKY
IKKIGGLKKIQEL

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yb0:B 349 253 1.0000 0.7249 1.0000 0.0 5yb0:A, 5yb0:C, 5yb0:D, 5yb0:E, 5yb0:F, 5yb0:G, 5yb0:H, 5yb0:I, 5yb0:J, 5yb0:K, 5yd2:A, 5yd2:B
2 4azj:A 360 257 0.4585 0.3222 0.4514 3.32e-76 4azj:B, 4azk:A, 4azk:B, 2bhx:A, 2bhx:B, 2bi1:A, 2bi1:B, 2bi2:A, 2bi2:B, 2bi3:A, 2bi3:B, 2bi5:A, 2bi5:B, 2bi9:A, 2bi9:B, 2bia:A, 2bia:B, 2bie:A, 2bie:B, 2big:A, 2big:B, 1w23:A, 1w23:B
3 1bt4:A 361 259 0.4427 0.3102 0.4324 2.01e-73 2c0r:A, 2c0r:B, 1w3u:A
4 6czy:A 362 263 0.4071 0.2845 0.3916 1.17e-65 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
5 8a5v:E 366 263 0.4071 0.2814 0.3916 2.76e-61 8a5v:C, 8a5v:F, 8a5v:B, 8a5v:A, 8a5v:G, 8a5v:H, 8a5w:D, 8a5w:C, 8a5w:E, 8a5w:F, 8a5w:B, 8a5w:A, 8a5w:H, 3e77:A, 3e77:B
6 3qbo:B 359 262 0.4111 0.2897 0.3969 1.53e-60 3qbo:A
7 1bjo:A 360 264 0.3953 0.2778 0.3788 9.16e-57 1bjo:B
8 6xdk:D 359 257 0.3636 0.2563 0.3580 2.84e-56 6xdk:B, 6xdk:A, 6xdk:C
9 7t7j:B 360 264 0.3874 0.2722 0.3712 1.26e-53 7t7j:A
10 3qm2:B 331 261 0.3439 0.2628 0.3333 6.09e-39 3qm2:A
11 2fyf:A 368 262 0.2451 0.1685 0.2366 1.00e-16 2fyf:B, 3vom:A, 3vom:B
12 3ffr:A 361 210 0.1739 0.1219 0.2095 3.62e-05
13 2dr1:A 381 282 0.2648 0.1759 0.2376 9.07e-05 2dr1:B
14 3kgw:B 388 251 0.2253 0.1469 0.2271 0.077 3kgw:A, 3kgx:A
15 7kgm:A 512 77 0.0830 0.0410 0.2727 0.32
16 7kgn:A 462 77 0.0830 0.0455 0.2727 0.88
17 5dzt:A 886 108 0.1383 0.0395 0.3241 1.0
18 3cg3:A 315 156 0.1462 0.1175 0.2372 2.4
19 3cg1:A 293 88 0.0909 0.0785 0.2614 4.0 3cg1:B
20 6ntw:A 505 77 0.0791 0.0396 0.2597 4.7
21 8et3:C 353 64 0.0830 0.0595 0.3281 7.8 8e7v:A, 8e7v:B, 8e7v:C, 8e7v:D, 8e7v:E, 8e7v:F, 8e8q:A, 8e8q:B, 8e8q:C, 8e8q:D, 8e8q:E, 8e8q:F, 8e91:A, 8e91:B, 8e91:C, 8e91:D, 8e91:E, 8e91:F, 8et3:A, 8et3:B, 8et3:D, 8et3:E, 8et3:F, 6po1:A, 6po1:B, 6po1:C, 6po1:D, 6po1:E, 6po3:A, 6po3:B, 6po3:C, 6po3:D, 6po3:E, 6po3:F, 6pod:B, 6pod:C, 6pod:D, 6pod:E, 6pod:F, 6pos:B, 6pos:A, 6pos:C, 6pos:D, 6pos:E, 6pos:F, 6pp5:A, 6pp5:B, 6pp5:C, 6pp5:D, 6pp5:E, 6pp6:A, 6pp6:B, 6pp6:C, 6pp6:D, 6pp6:E, 6pp6:F, 6pp7:B, 6pp7:C, 6pp7:D, 6pp7:E, 6pp7:F, 6pp8:B, 6pp8:A, 6pp8:C, 6pp8:D, 6pp8:E, 6pp8:F, 6wrf:B, 6wrf:C, 6wrf:A, 6wrf:D, 6wrf:E, 6wrf:F, 6wsg:B, 6wsg:C, 6wsg:D, 6wsg:E, 6wsg:F
22 6pod:A 329 64 0.0830 0.0638 0.3281 8.1 3hws:A, 6po1:F, 6pp5:F, 6pp7:A
23 5j62:B 209 42 0.0632 0.0766 0.3810 9.3 5j62:A
24 4i81:E 290 64 0.0830 0.0724 0.3281 9.5 4i81:D
25 3hws:D 316 64 0.0830 0.0665 0.3281 9.8 3hws:B, 3hws:E, 4i4l:A, 4i81:A, 4i81:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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