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BioLiP
>protein
FFPSGTIAFFIFMMVFYAVLWFMIYWVLLERG

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7deg:C 32 32 1.0000 1.0000 1.0000 1.39e-16 7deg:F
2 7xzh:B 730 24 0.2188 0.0096 0.2917 5.3 7m19:C, 7xzh:A, 7xzh:C, 7xzh:D, 7xzh:E, 7xzh:F
3 7stm:A 801 18 0.2188 0.0087 0.3889 8.8 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
4 6s6b:K 1024 15 0.2188 0.0068 0.4667 9.8 6s8b:K, 6s8e:K, 6s91:K, 6sh8:K, 6shb:K, 6sic:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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