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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FERIAVQPLTGVLGAEITGVDLREPLDDSTWNEILDAFHTYQVIYFPGQAITNEQHIAFSRRFGPVDPVPLLKSIEGYPE
VQMIRREGDESGRVIGDDWHTDSTFLDAPPAAVVMRAIDVPEHGGDTGFLSMYTAWETLSPTMQATIEGLNVVHSATRVF
GSLYQAQNRRFSNTSVKVMDVDAGDRETVHPLVVTHPGSGRKGLYVNQVYCQRIEGMSEKESEPLLSFLFAHATKPEFTC
RVRWKKDQVVVWDNLCTMHYAINDYHGQTRILHRTTVGGVRPARHHH

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5bk9:A 289 284 0.9164 0.9100 0.9261 0.0 5bk9:B, 5bkb:A, 5bkb:B, 5bkc:A, 5bkd:A, 5bkd:B, 6d0o:A, 6d0o:C, 6d0o:D, 6d3h:A, 6d3h:B, 6d3h:I, 6d3i:G, 6d3i:D, 6d3i:J, 6d3m:A, 6d3m:B, 6d3m:F, 6d3m:J
2 6d0o:B 267 286 0.9268 0.9963 0.9301 0.0
3 6d3h:M 287 284 0.8328 0.8328 0.8415 0.0 6d3i:A
4 5bkc:B 264 284 0.8467 0.9205 0.8556 1.75e-180
5 6d3j:A 247 284 0.7213 0.8381 0.7289 3.09e-149
6 6edh:A 281 281 0.3798 0.3879 0.3879 3.07e-66 6edh:B, 1gqw:A, 1gqw:B, 1gy9:A, 1gy9:B, 1os7:A, 1os7:B, 1os7:C, 1os7:D
7 3v17:A 276 284 0.3624 0.3768 0.3662 9.45e-58 3v17:C, 3v17:B, 3v17:D
8 7qte:B 284 274 0.3310 0.3345 0.3467 6.66e-51 7qtd:A, 7qtd:B, 7qtd:C, 7qtd:D, 7qte:A, 7qtg:A, 7qtg:B
9 5keu:B 280 282 0.3589 0.3679 0.3652 6.63e-49 5keu:A
10 5vn6:A 273 288 0.3345 0.3516 0.3333 1.26e-42 5vn6:B
11 1vz4:D 259 278 0.3171 0.3514 0.3273 9.53e-39 1oii:A, 1oii:B, 1oii:D, 1oij:A, 1oij:B, 1oik:A, 1oik:D, 1vz4:A
12 1oij:C 238 277 0.3066 0.3697 0.3177 2.01e-36 1oii:C, 1oij:D
13 4y0e:H 308 285 0.3031 0.2825 0.3053 1.26e-33 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
14 5bke:E 255 281 0.3101 0.3490 0.3167 8.15e-33 5bke:F, 5bke:G
15 5bke:C 289 295 0.3136 0.3114 0.3051 7.04e-31 5bke:A, 5bke:B, 5bke:D
16 4j5i:B 285 282 0.2892 0.2912 0.2943 2.39e-30 4j5i:C, 4j5i:G
17 3swt:B 246 285 0.2927 0.3415 0.2947 6.03e-30 3swt:A
18 3r1j:A 246 284 0.2962 0.3455 0.2993 1.81e-29 3r1j:B
19 8evo:B 242 280 0.2892 0.3430 0.2964 2.34e-29 4cvy:A, 4cvy:B, 4cvy:C, 4cvy:D
20 5j92:B 259 249 0.2718 0.3012 0.3133 7.66e-29 5j92:A, 5j92:C, 5j92:D
21 4j5i:E 250 280 0.2753 0.3160 0.2821 1.26e-26 4j5i:A, 4j5i:D, 4j5i:F, 4j5i:H
22 8kif:C 286 279 0.2509 0.2517 0.2581 1.67e-14 8kif:B, 8kif:A, 8kif:D
23 8kht:B 285 283 0.2509 0.2526 0.2544 4.71e-14 8kht:A
24 6dch:A 296 289 0.2404 0.2331 0.2388 2.11e-13 6l6w:A, 6l6x:A, 7scp:A, 6xn6:A, 6xo3:A, 6xoj:A, 6xpa:A
25 6l86:A 292 277 0.2195 0.2158 0.2274 4.54e-12 6l86:B, 6l86:C, 6l86:D
26 1l5j:A 862 103 0.0801 0.0267 0.2233 0.51 1l5j:B
27 5jcy:A 371 82 0.0662 0.0512 0.2317 5.3 5jcz:C, 4kp3:A, 4kp3:B, 6ku0:A, 6ku0:C, 4lx2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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