Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FERIAVQPLTGVLGAEITGVDLREPLDDSTWNEILDAFHTYQVIYFPGQAITNEQHIAFSRRFGPVDPVPLLKSIEGYPE
VQMIRREANESGRVIGDDWHTDSTFLDAPPAAVVMRAIDVPEHGGDTGFLSMYTAWETLSPTMQATIEGLNVVHSATRVF
GDAGDRETVHPLVVTHPGSGRKGLYVNQVYCQRIEGMTDAESKPLLQFLYEHATRFDFTCRVRWKKDQVLVWDNLCTMHR
AVPDYAGKFRYLTRTTVGGVRPAR

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5bkc:B 264 264 1.0000 1.0000 1.0000 0.0
2 5bk9:A 289 284 1.0000 0.9135 0.9296 0.0 5bk9:B, 5bkb:A, 5bkb:B, 5bkc:A, 5bkd:A, 5bkd:B, 6d0o:A, 6d0o:C, 6d0o:D, 6d3h:A, 6d3h:B, 6d3h:I, 6d3i:G, 6d3i:D, 6d3i:J, 6d3m:A, 6d3m:B, 6d3m:F, 6d3m:J
3 6d3h:M 287 284 0.9091 0.8362 0.8451 0.0 6d3i:A
4 6d0o:B 267 273 0.8939 0.8839 0.8645 1.45e-173
5 6d3j:A 247 264 0.8485 0.9069 0.8485 1.09e-166
6 6edh:A 281 278 0.3561 0.3345 0.3381 2.75e-54 6edh:B, 1gqw:A, 1gqw:B, 1gy9:A, 1gy9:B, 1os7:A, 1os7:B, 1os7:C, 1os7:D
7 7qte:B 284 259 0.3750 0.3486 0.3822 4.20e-51 7qtd:A, 7qtd:B, 7qtd:C, 7qtd:D, 7qte:A, 7qtg:A, 7qtg:B
8 5keu:B 280 262 0.3902 0.3679 0.3931 1.34e-49 5keu:A
9 3v17:A 276 278 0.3598 0.3442 0.3417 4.89e-48 3v17:C, 3v17:B, 3v17:D
10 1vz4:D 259 258 0.3409 0.3475 0.3488 3.37e-39 1oii:A, 1oii:B, 1oii:D, 1oij:A, 1oij:B, 1oik:A, 1oik:D, 1vz4:A
11 5vn6:A 273 279 0.3561 0.3443 0.3369 1.37e-38 5vn6:B
12 1oij:C 238 257 0.3258 0.3613 0.3346 6.46e-37 1oii:C, 1oij:D
13 5bke:E 255 271 0.3220 0.3333 0.3137 5.00e-32 5bke:F, 5bke:G
14 4j5i:B 285 270 0.3068 0.2842 0.3000 2.59e-31 4j5i:C, 4j5i:G
15 5j92:B 259 251 0.3030 0.3089 0.3187 2.82e-31 5j92:A, 5j92:C, 5j92:D
16 4j5i:E 250 260 0.2917 0.3080 0.2962 3.38e-30 4j5i:A, 4j5i:D, 4j5i:F, 4j5i:H
17 5bke:C 289 290 0.3333 0.3045 0.3034 1.18e-29 5bke:A, 5bke:B, 5bke:D
18 4y0e:H 308 278 0.3030 0.2597 0.2878 7.11e-29 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
19 8evo:B 242 260 0.2917 0.3182 0.2962 1.04e-28 4cvy:A, 4cvy:B, 4cvy:C, 4cvy:D
20 3swt:B 246 261 0.2917 0.3130 0.2950 1.20e-28 3swt:A
21 3r1j:A 246 260 0.2955 0.3171 0.3000 6.86e-28 3r1j:B
22 6l86:A 292 262 0.2424 0.2192 0.2443 2.11e-15 6l86:B, 6l86:C, 6l86:D
23 6dch:A 296 273 0.2576 0.2297 0.2491 3.44e-15 6l6w:A, 6l6x:A, 7scp:A, 6xn6:A, 6xo3:A, 6xoj:A, 6xpa:A
24 8kht:B 285 255 0.2500 0.2316 0.2588 6.89e-15 8kht:A
25 8kif:C 286 255 0.2538 0.2343 0.2627 2.69e-14 8kif:B, 8kif:A, 8kif:D
26 6ubn:B 791 119 0.1061 0.0354 0.2353 2.4 6byw:B, 6byw:A, 6byw:C, 6byw:D, 6eer:A, 6eer:B, 6eer:C, 6eer:D, 6ubn:A, 6ubn:C, 6ubn:D, 6ubr:B, 6ubr:A, 6ubr:C, 6ubr:D, 6ubz:B, 6ubz:A, 6ubz:C, 6ubz:D, 6uc1:B, 6uc1:A, 6uc1:D, 6uc1:C, 6ufq:A, 6ufq:B, 6ufq:C, 6ufq:D, 6vl7:A, 6vl7:B, 6vl7:C, 6vl7:D, 6vmf:A, 6vmf:B, 6vmf:C, 6vmf:D, 6vmv:A, 6vmv:B, 6vmv:C, 6vmv:D, 6vmw:B, 6vmw:A, 6vmw:C, 6vmw:D
27 7unr:E 200 41 0.0492 0.0650 0.3171 3.0 8cd1:E, 6spb:E, 6spd:E, 6spf:E, 6spg:E, 7unu:E, 7unv:E, 7unw:E
28 4ia6:A 579 21 0.0341 0.0155 0.4286 4.6
29 5jcy:A 371 82 0.0720 0.0512 0.2317 5.5 5jcz:C, 4kp3:A, 4kp3:B, 6ku0:A, 6ku0:C, 4lx2:A
30 5hrm:B 495 67 0.0795 0.0424 0.3134 5.6 5hrm:A, 5hrm:C, 5hrm:D
31 3i9f:B 169 62 0.0606 0.0947 0.2581 9.1 3i9f:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218