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BioLiP
>protein
FERHVFKGIEHTDTGALVSVKGSGTQEEDVPVINSGYGFTPAADTELEVFLHGDGSDASNKFATMTIPRNKQRKWPEGAG
GVQHPFNADKFVQFDDDSIWLKDGKFTLGNNQELTITVSNGLVTLSSNNEVDFRCPKLMHNGVNIGDSHVHPQKPDSGGD
SEEDTDPP

The query sequence (length=168) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fqc:A 168 168 1.0000 1.0000 1.0000 3.17e-124
2 8hsm:A 280 154 0.2560 0.1536 0.2792 1.0 8hso:A, 8hsw:A, 8ht1:A, 8ht9:A
3 3qzp:B 125 27 0.0774 0.1040 0.4815 8.9 2itf:A, 2itf:B, 2itf:C, 2itf:D, 3qzl:A, 3qzm:A, 3qzm:B, 3qzn:A, 3qzn:B, 3qzn:C, 3qzo:A, 3qzo:C, 3qzo:B, 3qzo:D, 3qzp:A
4 1e3j:A 348 34 0.0714 0.0345 0.3529 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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