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BioLiP
>protein
FEMADKLYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEILR

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1z56:B 76 76 1.0000 1.0000 1.0000 2.26e-49
2 6kdv:B 283 51 0.2237 0.0601 0.3333 1.8 6kdv:D, 6kdv:C, 6kdv:A
3 2dki:A 615 47 0.1842 0.0228 0.2979 5.2 2dkh:A
4 1ik9:A 207 44 0.2105 0.0773 0.3636 6.2 1ik9:B, 3rwr:J, 3rwr:Y
5 5w7c:C 420 39 0.1711 0.0310 0.3333 6.3 5w78:B, 5w7c:D
6 6m0r:A 750 46 0.2105 0.0213 0.3478 8.2 7tao:A
7 8a22:BD 270 51 0.2237 0.0630 0.3333 9.7 8apn:BC, 8apo:BD

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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