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BioLiP
>protein
FEDIDTFEEAFNKLLREVLEFDLQNPFKDAKKVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSG
HELAAIRRKEEEESARLLGVKKIYWLNYRDTELPYSREVRKDLTKILRKEQPDGVFAPDPWLPYESHPDHRRTGFLAIES
VAFSQLPNFSNTDLDIGLNPYNSGSFIALYYTHKPNYIVDITDLMELKLKAIRVHRSQFPDDIWEKWEPFLRTIAMFYGE
KIGVRYGEGFRIMPGLFYHITPFTDLI

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5b2e:A 267 267 1.0000 1.0000 1.0000 0.0 5b2e:B, 5b2e:C, 5b2f:A, 5b2f:B, 5b2f:C, 3we7:A, 3we7:B, 3we7:C, 3wl3:A, 3wl3:B, 3wl3:C
2 3wl4:A 267 267 0.8801 0.8801 0.8801 0.0 3wl4:B, 4xm0:A, 4xm0:B, 4xm0:C, 4xm0:D, 4xm0:E, 4xm0:F, 4xm1:A, 4xm1:B, 4xm1:C, 4xm1:D, 4xm1:E, 4xm1:F, 4xm2:A, 4xm2:B, 4xm2:C, 4xm2:D, 4xm2:E, 4xm2:F
3 8bgo:G 271 267 0.8015 0.7897 0.8015 4.04e-167 8bgn:A, 8bgn:B, 8bgn:C, 8bgo:A, 8bgo:H, 8bgo:K, 8bgo:B, 8bgo:E, 8bgo:L, 8bgo:C, 8bgo:I, 8bgo:J, 8bgo:F, 8bgo:D, 8bgp:A, 8bgp:B, 8bgp:C, 8bgp:D, 8bgp:E, 8bgp:F
4 2ixd:A 232 228 0.2584 0.2974 0.3026 4.88e-22 2ixd:B
5 6p2t:A 232 228 0.2360 0.2716 0.2763 1.32e-20 6ull:A
6 5cgz:A 240 201 0.1685 0.1875 0.2239 0.003 5cgz:B
7 1q7t:A 310 153 0.1461 0.1258 0.2549 0.005 4ewl:A, 4ewl:B, 1q74:A, 1q74:B, 1q74:C, 1q74:D, 1q7t:B
8 3dfi:A 242 140 0.1311 0.1446 0.2500 0.61
9 3ujk:A 298 74 0.0824 0.0738 0.2973 1.1 3nmv:B, 3ujl:B
10 4zda:A 735 50 0.0637 0.0231 0.3400 1.2 4zda:B, 4zda:C, 4zda:D, 4zda:E, 4zda:F
11 6iiy:A 237 38 0.0412 0.0464 0.2895 4.9
12 3dff:A 266 38 0.0412 0.0414 0.2895 5.1 3dfk:A, 3dfm:A, 2x9l:A, 2xad:A, 2xad:B, 2xad:C, 2xad:D
13 8swu:A 269 67 0.0674 0.0669 0.2687 6.2 8swu:B, 8swu:C
14 4n2i:A 662 52 0.0674 0.0272 0.3462 6.5 4n22:A, 4n24:A, 4n26:A, 4n28:A, 4n2a:A, 4n2b:A, 4n2c:A, 4n2e:A, 4n2g:A, 4n2l:A, 4n2m:A, 4n2n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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