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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FDYTVEQFADLQILRYKVPEFETLTLKQKELVYYLTQAALEGRDILFDQNGKYNLRIRRMLEAVYTNYKGDKSAPDFKNM
EVYLKRVWFSNGIHHHYGMEKFVPGFSQDFLKQAVLGTDAQLLPLSEGQTAEQLCDELFPVMFDPAILAKRVNQADGEDL
VLTSACNYYDGVTQQEAESFYGAMKDPKDETPVSYGLNSRLVKEKIQEKVWKVGGLYTQAIEKIVYWLKKAETVAENDAQ
KAVISKLIQFYETGSLKDFDEYAILWVKDLDSRIDFVNGFTESYGDPLGVKASWESLVNFKDLDATHRTEIISSNAQWFE
DHSPVDKSFKKEKVKAKVITAAILAGDLYPATAIGINLPNANWIRAHHGSKSVTIGNITDAYNKAAHGNGFNEEFVCNDE
ERQRIDQYGDLTGELHTDLHECLGHGSGKLLPGVDPDALKAYGSTIEEARADLFGLYYVADPKLVELKLVPDAEAYKAEY
YTFLMNGLMTQLVRIEPGNNIEEAHMRNRQLIARWVFEKGAPDKVVEMVKKDGKTYVVVNDYEKVRQLFGELLAEIQRIK
STGDFEGARTLVENYAVKVDPALHAEVLARYKKLNLAPYKGFINPVYELVTDKDGNITDVTVSYNEDYVEQMLRYSKDYS
PLPSVNN

The query sequence (length=647) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5na8:A 651 651 0.9923 0.9862 0.9862 0.0 5na6:A, 5na7:A, 5na8:B
2 5e2q:A 725 637 0.2318 0.2069 0.2355 5.99e-30 5e33:A, 5e3a:A, 5e3c:A, 5egy:A, 5ehh:A, 3fvy:A, 7oup:A, 3t6b:A, 3t6b:B, 3t6j:A
3 3csk:A 710 666 0.2581 0.2352 0.2508 1.48e-28
4 5yfb:A 691 435 0.1777 0.1664 0.2644 7.25e-27 5yfb:B, 5yfd:A, 5yfd:B
5 6eom:A 524 467 0.1870 0.2309 0.2591 1.20e-17
6 5zum:B 537 366 0.1484 0.1788 0.2623 3.05e-11 5zum:A
7 1wuf:A 371 51 0.0247 0.0431 0.3137 3.0 1wuf:B
8 8paq:A 159 37 0.0216 0.0881 0.3784 4.2
9 7uf8:A 341 118 0.0417 0.0792 0.2288 4.4 7uf8:B, 7uf8:C, 7uf8:D
10 7zg8:AAA 525 135 0.0526 0.0648 0.2519 4.7 7zg8:BBB
11 4twl:A 239 78 0.0325 0.0879 0.2692 5.1 4twl:B
12 3zqj:C 890 65 0.0325 0.0236 0.3231 5.2
13 6r1g:A 148 74 0.0294 0.1284 0.2568 5.6 6r1g:B
14 1fr6:A 361 108 0.0355 0.0637 0.2130 6.4 1fr6:B, 8jb8:A, 8jb8:B, 1rgy:A
15 3nlc:A 534 59 0.0263 0.0318 0.2881 8.6
16 4hka:A 345 33 0.0201 0.0377 0.3939 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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