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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAV
YSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRR
GVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKI
LALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSV
HPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAIDYKKTSLAPYVKVFEHFLENLDKSR

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d0k:D 419 403 1.0000 0.9117 0.9479 0.0 4bpu:A, 4bpu:C, 4bpw:A, 4bpw:C, 4bpx:A, 4bpx:C, 9c8v:A, 8d9d:A, 5exr:A, 5exr:E, 4lik:A, 4lil:A, 4mhq:A, 7opl:C, 8qj7:C, 6r4s:A, 6r4s:E, 6r4t:A, 6r4t:D, 6r4u:A, 6r4u:E, 6r5d:A, 6r5d:E, 6r5e:A, 6r5e:E, 6rb4:A, 4rr2:A, 4rr2:C, 7u5c:A
2 8g9f:D 381 387 0.7330 0.7349 0.7235 0.0 8v5m:D, 8v5n:D, 8v5o:D, 8v6g:D, 8v6h:D, 8v6i:D, 8v6j:D
3 4lim:A 381 382 0.3298 0.3307 0.3298 1.99e-76
4 1v33:A 346 319 0.2042 0.2254 0.2445 2.06e-08 1v34:A
5 1g71:A 344 157 0.1230 0.1366 0.2994 7.72e-08 1g71:B
6 6qv5:A 289 73 0.0419 0.0554 0.2192 0.65
7 5x2m:D 422 61 0.0393 0.0355 0.2459 2.5 5x2p:D
8 5x2n:B 459 56 0.0366 0.0305 0.2500 3.1 5x2m:B, 5x2n:D, 5x2o:B, 5x2o:D, 5x2p:B, 5x2q:B, 5x2q:D
9 4ycg:B 198 49 0.0419 0.0808 0.3265 3.8 4ycg:A, 4yci:A, 4yci:B
10 6c9x:A 666 74 0.0524 0.0300 0.2703 4.6 6c9x:B, 6c9z:A, 6c9z:B, 6ca1:A, 6ca1:B, 6ca3:A, 6ca3:B, 3mkk:B, 3mkk:A, 3pha:A, 3pha:B, 3pha:C, 3pha:D, 3poc:B, 3poc:A
11 2ymb:D 231 44 0.0419 0.0693 0.3636 4.8 4a5x:A, 4a5x:B, 2ymb:C
12 7nqf:B 219 35 0.0314 0.0548 0.3429 5.6 7nqe:A, 7nqf:A, 7p9j:B, 7p9j:A, 7p9j:C, 7qaz:B, 7qaz:A, 7qaz:C
13 2ecg:A 75 23 0.0209 0.1067 0.3478 6.2 4ic2:A, 4ic2:B, 4ic3:A, 4ic3:B, 5o6t:A, 5o6t:B, 8w59:A, 8w59:B, 8w5a:A, 8w5a:B
14 2d7i:A 536 23 0.0288 0.0205 0.4783 6.4 2d7r:A
15 4r2b:A 395 26 0.0288 0.0278 0.4231 7.0 4r2b:B
16 5xyi:Q 133 70 0.0471 0.1353 0.2571 7.2
17 2wvz:B 742 84 0.0524 0.0270 0.2381 9.6 2wvx:A, 2wvx:B, 2wvx:C, 2wvx:D, 2wvz:A, 2wvz:C, 2wvz:D, 2ww0:A, 2ww0:B, 2ww0:C, 2ww0:D, 2ww0:E, 2ww0:F, 2ww0:G, 2ww0:H, 2ww1:A, 2ww1:B, 2ww1:C, 2ww1:D, 2ww3:A, 2ww3:B, 2ww3:C, 2ww3:D, 2ww3:E, 2ww3:F, 2wzs:A, 2wzs:B, 2wzs:C, 2wzs:D, 2wzs:E, 2wzs:F, 2wzs:G, 2wzs:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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