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BioLiP
>protein
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gaf:i 398 77 0.9855 0.1709 0.8831 5.45e-39 1dul:A, 1hq1:A, 3lqx:A, 2pxb:A, 2pxd:A, 2pxe:A, 2pxf:A, 2pxk:A, 2pxl:A, 2pxp:A, 2pxq:A, 2pxt:A, 2pxu:A, 2pxv:A
2 2j28:9 430 102 0.9855 0.1581 0.6667 7.86e-35 5aka:5
3 5gad:i 450 97 0.9130 0.1400 0.6495 1.72e-31 4c7o:A, 4c7o:C, 5gag:i, 5gah:i, 5nco:i, 7o9g:A, 7o9i:A, 2xkv:C, 2xxa:A, 2xxa:C
4 7o5b:g 403 63 0.5362 0.0918 0.5873 9.21e-19 7o9f:A, 7o9f:C, 7o9f:B, 4ue4:C
5 7epk:A 426 56 0.4203 0.0681 0.5179 3.03e-10
6 4xco:C 157 68 0.3913 0.1720 0.3971 3.14e-09
7 3dm5:A 416 58 0.3768 0.0625 0.4483 4.42e-09 3dm5:B
8 3ndb:B 420 67 0.3623 0.0595 0.3731 8.60e-09 2v3c:C, 2v3c:D, 4xco:D
9 1qzw:A 432 54 0.3913 0.0625 0.5000 8.05e-07 3kl4:A, 5l3s:A, 5l3s:C, 5l3s:E, 5l3s:G, 5l3v:A, 5l3v:B, 1qzw:C, 1qzw:E, 1qzw:G, 3zn8:M
10 6z1p:AT 166 54 0.2319 0.0964 0.2963 0.001
11 3jaj:z 426 34 0.2174 0.0352 0.4412 0.004 6frk:x, 3jan:z, 7obq:x, 6r6g:AB
12 7obr:x 488 34 0.2174 0.0307 0.4412 0.006 2go5:W, 2j37:W, 5l3q:A, 5l3q:C, 1mfq:C, 7nfx:x, 7qwq:x, 1ry1:W, 4ue5:D, 6y2z:A, 6y32:A, 6y32:C, 6y32:E, 6y32:G
13 7uea:U 364 32 0.1594 0.0302 0.3438 1.4 3bsd:A, 3eni:A, 3eni:C, 8gwa:1, 8gwa:2, 8gwa:3, 8gwa:4, 8gwa:5, 8gwa:6, 5h8z:A, 5h8z:C, 6m32:E, 6m32:F, 6m32:G, 7uea:V, 7uea:W, 7ueb:U, 7ueb:V, 7ueb:W, 7ueb:X, 7ueb:Y, 7ueb:Z, 7z6q:E, 7z6q:F, 7z6q:G, 7z6q:H, 7z6q:I, 7z6q:J
14 3o0n:A 607 57 0.2319 0.0264 0.2807 1.8 1xjm:B
15 3qo8:A 441 47 0.1884 0.0295 0.2766 2.0 3qo7:A
16 8isk:B 848 36 0.1594 0.0130 0.3056 2.5 8isk:A
17 8sak:A 1121 47 0.2319 0.0143 0.3404 3.3
18 7xs0:A 376 61 0.2319 0.0426 0.2623 7.6
19 6mez:B 359 42 0.1884 0.0362 0.3095 7.9 4bcl:A, 3eoj:A, 6mez:A, 3vdi:A
20 6eko:A 312 32 0.1594 0.0353 0.3438 8.4 6eko:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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