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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FDIWKNLDRIRSTKKNAGQFIKGSLLILPMRTEDKQQFDECMDELHKYISKDILRCYPQKEMLFYIVLKDFNILDSCFVL
SVLLAFQKRLWMAPSEKSYFRVPKNINLTGSFYLPKNIETSSIVEVGFNVVPDFQQFQVKACHVSKFMNELSNFFSQVEF
GKCEANVINYFKREYNRTYSQISLALYELPLIGDGLFDIKSYISKTRPIIETSKAQMIKHISEMKAYNE

The query sequence (length=229) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n7p:G 239 235 1.0000 0.9582 0.9745 1.47e-168 6g90:G, 6n7r:G, 6n7x:G, 7oqc:G, 7oqe:G, 8w2o:G, 5zwn:W
2 3x3m:A 397 72 0.0742 0.0428 0.2361 0.25 5ebc:A, 3x3n:A
3 5qu2:A 56 30 0.0524 0.2143 0.4000 0.53 5qu2:B
4 3juv:A 448 168 0.1878 0.0960 0.2560 3.1 3jus:B, 3jus:A, 3ld6:B, 3ld6:A, 6q2t:A, 6q2t:B, 8sbi:A, 8sbi:B, 8ss0:A, 8ss0:B, 6uez:A, 6uez:B, 4uhi:A, 4uhi:B, 4uhi:C, 4uhi:D, 4uhl:A, 4uhl:F, 4uhl:B, 4uhl:C, 4uhl:D, 4uhl:E, 4uhl:G, 4uhl:H
5 4jix:A 112 40 0.0611 0.1250 0.3500 5.7 4jix:B
6 3am8:A 276 61 0.0699 0.0580 0.2623 8.0 3am8:B, 7bh8:A, 7bh8:C, 3bze:A, 3bze:C, 3bze:G, 3bze:E, 3bzf:A, 3bzf:C, 3cdg:A, 3cdg:C, 3cii:A, 3cii:D, 2esv:A, 6ggm:A, 6ggm:C, 6gh1:A, 6gh1:C, 6gh1:E, 6gh1:G, 6gh4:A, 6gh4:C, 6gh4:E, 6gh4:G, 6ghn:A, 6ghn:C, 6gl1:A, 6gl1:E, 6gl1:G, 6gl1:C, 1kpr:A, 1kpr:C, 1ktl:A, 1ktl:C, 1mhe:A, 1mhe:C, 7ndq:AAA, 7ndt:AAA, 7ndt:FFF, 7ndu:AAA, 7p49:A, 7p49:C, 7p49:E, 7p49:G, 7p4b:A, 7p4b:E, 7p4b:C, 7p4b:G, 8qfy:AAA, 8qfy:FFF, 5w1v:A, 5w1v:F, 5w1v:K, 5w1v:P, 5w1w:A, 5w1w:F, 5w1w:K, 5w1w:P, 6zkw:A, 6zkx:A, 6zky:A, 6zkz:A
7 6tr4:A 506 60 0.0742 0.0336 0.2833 8.7 6tr3:A, 6tr4:B
8 4v8p:BO 184 25 0.0524 0.0652 0.4800 9.1 4v8p:EO, 4v8p:GO

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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