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BioLiP
>protein
FDGLAPYVETFNNRGCEFPKSGYEGPASNDDNDEMCVKVSMLRVKVSQSYAAKQIQQFSGFKESGIDVKQISNVKKIY

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7sut:A 78 78 1.0000 1.0000 1.0000 4.28e-54 7sut:E
2 4lms:A 80 74 0.4744 0.4625 0.5000 1.05e-20
3 7t7u:A 81 77 0.4487 0.4321 0.4545 5.80e-20
4 7t8s:B 78 64 0.3462 0.3462 0.4219 5.96e-14 7t8s:F, 7t8s:J, 7t8s:N
5 7tja:I 75 64 0.3846 0.4000 0.4688 6.26e-13 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
6 1qgw:A 76 64 0.3974 0.4079 0.4844 1.27e-10 1xf6:A, 1xg0:A
7 7t8s:D 70 57 0.2949 0.3286 0.4035 5.18e-09 7t8s:H, 7t8s:L, 7t8s:P
8 4lms:C 68 55 0.3077 0.3529 0.4364 1.57e-07
9 7sut:C 63 48 0.2308 0.2857 0.3750 8.58e-06 7sut:G
10 1qgw:B 67 47 0.2051 0.2388 0.3404 4.94e-05 1xf6:B, 1xg0:B
11 7tja:G 67 47 0.2051 0.2388 0.3404 6.48e-05 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
12 7t7u:C 70 53 0.2564 0.2857 0.3774 6.81e-05
13 4lm6:A 62 54 0.2564 0.3226 0.3704 0.001 4lm6:C
14 7ssf:A 72 45 0.2564 0.2778 0.4444 0.005 7ssf:C, 7ssf:E, 7ssf:G
15 4lmx:E 66 58 0.2821 0.3333 0.3793 0.019 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
16 4lmx:C 66 65 0.3205 0.3788 0.3846 0.075 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
17 3ce6:A 486 32 0.1538 0.0247 0.3750 1.2 3ce6:B, 3ce6:C, 3ce6:D, 3dhy:A, 3dhy:B, 3dhy:C, 3dhy:D, 2ziz:A, 2ziz:B, 2ziz:C, 2ziz:D, 2zj0:A, 2zj0:B, 2zj0:C, 2zj0:D, 2zj1:A, 2zj1:B, 2zj1:C, 2zj1:D
18 6rxu:UJ 1090 21 0.1410 0.0101 0.5238 6.1 5oql:G, 6rxt:UJ, 6rxv:UJ, 6rxy:UJ, 6rxz:UJ
19 7bi6:A 829 52 0.1795 0.0169 0.2692 8.4 8a9i:A, 7bi9:A, 7z74:A, 7z75:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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