Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FDEFPIGDEQDAGILTVAGVYFQPVDMEPAGNSLSKNEADCHMEADISANEKGATLGYGAGDFVPYLHVKAYIQKVGSSK
VQEVAFMPMNASDGPHYGANVKFEEGLGKYNIKFEIKAPGNDYLLHVDKETGVTGRFWTEPIVVEWKDFEWTGPQW

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8t7m:B 160 156 1.0000 0.9750 1.0000 1.68e-115 8t7l:A, 8t7l:B, 8t7m:A
2 2o6d:A 158 158 0.7051 0.6962 0.6962 1.26e-78 2o6d:B, 2o6e:A, 2o6e:B, 3pjl:A, 3pjl:B, 3pjn:A, 3pjn:B
3 5i0x:B 158 154 0.4231 0.4177 0.4286 6.66e-33 5i0x:A, 5i0y:A, 5i0y:B, 3nrq:A, 3nrq:B
4 7r5e:B 157 159 0.4487 0.4459 0.4403 1.35e-31 7r4v:B, 7r4v:A, 7r4z:A, 7r4z:B, 7r5e:A, 7r5g:A, 7r5g:B, 7r5p:A, 7r5p:B, 7r5p:C, 7r5p:D, 7r5p:E, 7r5p:F
5 5i0v:A 159 158 0.4038 0.3962 0.3987 1.35e-29 5i0v:B, 5i0w:A, 5i0w:B, 3lzl:A, 3lzl:B, 3lzn:A, 3lzn:B, 3lzo:A, 3lzo:B, 3lzp:A, 3lzp:B, 3lzq:A, 3lzq:B, 3lzr:A, 3lzr:B, 6wed:A, 6wed:B, 6wee:A, 6wee:B, 6wee:C, 6wee:D, 6wee:E, 6wee:F, 6wef:C, 6wef:D, 6wef:A, 6wef:B, 6wef:E, 6wef:F, 6wef:G, 6wef:H, 6wef:I, 6wef:J, 6wef:K, 6wef:L
6 6zt3:A 394 23 0.0705 0.0279 0.4783 2.0 4bae:A, 4bae:B, 4bae:C, 4bae:D
7 8k8y:A 719 26 0.0577 0.0125 0.3462 2.2 8k8y:G, 8k8y:F, 8k8y:E, 8k8y:D, 8k8y:C, 8k8y:B, 8k8z:A, 8k8z:F, 8k8z:E, 8k8z:D, 8k8z:C, 8k8z:B, 8k90:B, 8k90:C, 8k90:D, 8k91:A, 8k91:B, 8k91:C, 8k91:D, 8k91:E, 8k91:F, 8k91:G, 8k92:A, 8k92:F, 8k92:E, 8k92:D, 8k92:C, 8k92:B, 8k93:B, 8k93:C, 8k93:D, 8k93:E, 8k94:B, 8k94:C, 8k94:D, 8k95:A, 8k95:B, 8k95:C, 8k95:D, 8k95:E, 8k96:B, 8k96:A, 8k96:G, 8k96:F, 8k96:E, 8k96:D, 8k96:C, 8k97:A, 8k97:F, 8k97:E, 8k97:D, 8k97:C, 8k97:B
8 7ev6:A 594 26 0.0577 0.0152 0.3462 2.3 7eux:A, 7euy:A, 7ev4:A, 4fwd:A, 4fwg:A, 4fwh:A
9 6y8o:A 188 23 0.0705 0.0585 0.4783 2.5 4b6c:A, 4b6c:B, 6y8o:B
10 1eiz:A 180 72 0.1474 0.1278 0.3194 2.9 1ej0:A
11 6gau:A 1088 23 0.0641 0.0092 0.4348 3.4 5bs8:A, 5bs8:B, 5bs8:C, 5bs8:D, 5bta:A, 5bta:B, 5bta:C, 5bta:D, 5btc:A, 5btc:B, 5btc:C, 5btc:D, 5btd:A, 5btd:B, 5btd:C, 5btd:D, 5btf:A, 5btf:B, 5btf:C, 5btf:D, 5btg:A, 5btg:B, 5btg:C, 5btg:D, 5bti:A, 5bti:B, 5bti:C, 5bti:D, 5btl:A, 5btl:B, 5btl:C, 5btl:D, 5btn:A, 5btn:B, 5btn:C, 5btn:D, 9foy:A, 9foy:B, 6gau:B, 7ugw:A, 7ugw:B, 7ugw:C, 7ugw:D
12 1u3f:A 164 41 0.0705 0.0671 0.2683 6.4 1u3f:B, 1u3g:A
13 8b8f:A 151 32 0.0833 0.0861 0.4062 6.4 8b97:A
14 3zkb:D 392 23 0.0641 0.0255 0.4348 7.1 3zkb:A, 3zkb:B, 3zkb:C, 3zkb:E, 3zkb:F, 3zkb:G, 3zkb:H, 3zkb:I, 3zkb:J, 3zkb:K, 3zkb:L, 3zkb:M, 3zkb:N, 3zkb:O, 3zkb:P, 3zkd:A, 3zkd:B, 3zkd:C, 3zkd:D, 3zkd:E, 3zkd:F, 3zkd:G, 3zkd:H
15 7du5:B 118 52 0.1090 0.1441 0.3269 7.9 7du5:A, 5hjz:A, 5hjz:B
16 6tg9:A 949 57 0.0769 0.0126 0.2105 8.1 6tg9:E, 6tga:A, 6tga:E
17 3zm7:A 359 23 0.0641 0.0279 0.4348 8.7 3zm7:B, 3zm7:C, 3zm7:D, 3zm7:E, 3zm7:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218