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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FASQAVAKPYFVFALILFVGQILFGLIMGLQYVVGDFLFPAIPFNVARMVHTNLLIVWLLFGFMGAAYYLVPEESDCELY
SPKLAWILFWVFAAAGVLTILGYLLVPYAGLARLTGNELWPTMGREFLEQPTISKAGIVIVALGFLFNVGMTVLRGRKTA
ISMVLMTGLIGLALLFLFSFYNPENLTRDKFYWWWVVHLWVEGVWELIMGAILAFVLVKITGVDREVIEKWLYVIIAMAL
ISGIIGTGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFNTINRRRRDYPNRAVALWAMGTTVMAFLGAGVWGFMH
TLAPVNYYTHGTQLTAAHGHMAFYGAYAMIVMTIISYAMPRLRGIGEAMDNRSQVLEMWGFWLMTVAMVFITLFLSAAGV
LQVWLQRMPADGAAMTFMATQDQLAIFYWLREGAGVVFLIGLVAYLLSF

The query sequence (length=449) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5guw:B 449 449 1.0000 1.0000 1.0000 0.0 5guw:D, 5gux:B, 3o0r:B, 3wfb:B, 3wfc:B, 3wfd:B, 3wfe:B
2 4xyd:A 445 441 0.5367 0.5416 0.5465 2.43e-159
3 3ayf:A 754 477 0.3341 0.1989 0.3145 3.85e-49 3ayg:A
4 8bgw:A 750 489 0.2895 0.1733 0.2658 2.20e-22 8bgw:B, 6qq5:A, 6qq5:B, 6qq6:A, 6qq6:B, 6t6v:A
5 6l1x:A 708 473 0.2784 0.1766 0.2643 2.32e-17
6 6l3h:A 741 484 0.2784 0.1687 0.2583 1.89e-15 6l3h:B
7 6fwf:A 712 486 0.2695 0.1699 0.2490 1.86e-13
8 8smr:E 468 413 0.2160 0.2073 0.2349 6.82e-06 8snh:E
9 8smr:E 468 89 0.0535 0.0513 0.2697 0.73 8snh:E
10 5djq:A 466 402 0.2138 0.2060 0.2388 0.007 5djq:D, 5djq:G, 5djq:K, 3mk7:A, 3mk7:D, 3mk7:G, 3mk7:K
11 5djq:A 466 89 0.0512 0.0494 0.2584 0.46 5djq:D, 5djq:G, 5djq:K, 3mk7:A, 3mk7:D, 3mk7:G, 3mk7:K
12 6xkw:n 471 387 0.1871 0.1783 0.2171 0.045 6xkx:n, 6xkz:n
13 6kob:A 607 452 0.2183 0.1614 0.2168 0.53 6kob:E, 6koc:A, 6koc:E, 6koe:A, 6koe:E
14 6ob6:B 357 99 0.0646 0.0812 0.2929 0.88
15 8tzi:A 385 99 0.0646 0.0753 0.2929 1.2 6ob6:A, 6ob7:A
16 6hwh:V 550 106 0.0468 0.0382 0.1981 1.7 6hwh:Q
17 7zkw:A 243 106 0.0535 0.0988 0.2264 2.1 7zkw:B
18 6rfq:5 654 102 0.0557 0.0382 0.2451 2.7 7o6y:5, 6rfr:5
19 6iox:A 339 41 0.0356 0.0472 0.3902 3.3 6iox:B
20 2ohf:A 327 62 0.0401 0.0550 0.2903 5.7
21 2yev:A 780 81 0.0468 0.0269 0.2593 5.7 2yev:D
22 3eh3:A 557 97 0.0468 0.0377 0.2165 6.8 8ajz:A, 3bvd:A, 1ehk:A, 3eh4:A, 3eh5:A, 4fa7:A, 4faa:A, 4g70:A, 4g71:A, 4g72:A, 4g7q:A, 4g7r:A, 4g7s:A, 4gp4:A, 4gp5:A, 4gp8:A, 8hua:A, 8k65:A, 8k6y:A, 4n4y:A, 5ndc:A, 3qjq:A, 3qjr:A, 3qjs:A, 3qjt:A, 3qju:A, 3qjv:A, 2qpd:A, 2qpe:A, 3s33:A, 3s38:A, 3s39:A, 3s3a:A, 3s3b:A, 3s3c:A, 3s3d:A, 3s8f:A, 3s8g:A, 1xme:A
23 5vcm:B 358 52 0.0312 0.0391 0.2692 9.6 5vcm:A, 5vcs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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