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BioLiP
>protein
FAGTVSALASIGLGLLGKSSATPSVIKGIAQQAVGAVQANPGILEGAVKAIGSVGARLVGSIKARRA

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2qqp:F 67 67 1.0000 1.0000 1.0000 8.73e-39
2 7xe1:A 751 28 0.1940 0.0173 0.4643 0.16 4fwe:A, 4fwf:A, 4fwj:A, 4fwj:B, 4gu0:A, 4gu0:C, 4gu0:B, 4gu0:D, 4gu1:A, 4gu1:B, 4gur:A, 4gus:A, 4gut:A, 4guu:A, 4hsu:A, 6r1u:K, 6r25:K, 7xe1:B, 7xe2:A, 7xe2:B, 7xe3:A, 7xe3:B
3 2uvn:A 399 31 0.1940 0.0326 0.4194 4.2 2uuq:A, 2uvn:B, 2wgy:A, 2wh8:A, 2wh8:B, 2wh8:C, 2wh8:D, 2whf:A
4 8fmw:K 117 56 0.2687 0.1538 0.3214 6.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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