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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FAFNVLKYITFRSFTAVLIAFFLTLVLSPSFINRLRKIVKKYTPTMGGIVILIVVTLSTLLLMRWDIKYTWVVLLSFLSF
GTIGFWDDYVKLKNKKGISIKTKFLLQVLSASLISVLIYYWADIDTILYFPFFKELYVDLGVLYLPFAVFVIVGSANAVN
LTDGLDGLAIGPAMTTATALGVVAYAVGHSKIAQYLNIPYVPYAGELTVFCFALVGAGLGFLWFNSFPAQMFMGDVGSLS
IGASLATVALLTKSEFIFAVAAGVFVFETISVILQIIYFRWTGGKRLFKRAPFHHHLELNGLPEPKIVVRMWIISILLAI
IAISMLKL

The query sequence (length=328) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9b70:B 341 341 0.9878 0.9501 0.9501 0.0 9b70:A, 9b71:A, 9b71:B, 5ckr:A, 8cxr:A, 6oyh:A, 6oyh:C, 6oyh:B, 6oyh:D, 6oyz:A, 6oz6:A
2 6oz6:C 322 328 0.9695 0.9876 0.9695 0.0 8cxr:C, 6oz6:B
3 5jnq:A 307 305 0.3201 0.3420 0.3443 9.99e-41
4 5o5e:A 381 176 0.1311 0.1129 0.2443 1.11e-05 6bw5:A, 6bw5:B, 6bw5:C, 6bw6:A, 6bw6:B, 6bw6:C, 6bw6:D, 6fm9:A, 6fwz:A
5 6bw5:D 362 175 0.1250 0.1133 0.2343 5.87e-04
6 6o0e:A 799 32 0.0396 0.0163 0.4062 2.7
7 3d8v:A 478 112 0.0823 0.0565 0.2411 5.7 3dj4:A, 4g3p:A, 4g3q:A, 4g3s:A, 4g87:A, 6ge9:A, 4hcq:A, 4k6r:A, 2qkx:A, 3spt:A, 3st8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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