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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FADTVWLIPFYSLAGMVLSLIWSPGITRKTGPRPAGYLNILLTFFSFVHALLATVAIANQPPQYLHWTWLDVAGLHLDIP
VEISILTTTALMLITALNLMAQVFAVGYMEMDWGWARFFALLALFEGGMGALVLLDSLFFNYVVLEILTLATYLLIGLWF
NQPLVVTGARDAFLTKRVGDLVLLMGVLAIYPLAGSWNYDDLAAWAATAQVNSTLITLICLALIAGPMGKCAQFPLHLWL
DEAMEGPIPASILRNAVVVATGAWVLVKLTPVLSLSPVALTALLVIGSVTALGGTLIAIAQVDIKRALSYLVSAYMGWVF
IAVGLKEPGLAFVFILTYSLAMAVLMMSIGSIIWNSVTQDLRLLGGLWSRRPISGISFLVGSAGLLAVPPLASFFPQAEL
LDTAFAQLPWVGGVLLLMNTFAAFSLGRTFCLVWGGEVKPMTARSPEVFWPMILPMTVDLGLVLHLPILMARFDWVIWTQ
PSLATAAALTITALLGWGVAAWVYLGKAIPKPVQFPLPSVQNLLAYDFYTPKLYRATVVGVVDMISRITAWFDRTFVDGT
GNAFGVVTLLGGDRLKYSTTGQSQAYILTILMGIAILVIA

The query sequence (length=600) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tjv:F 600 600 1.0000 1.0000 1.0000 0.0
2 6l7o:F 647 646 0.3100 0.2875 0.2879 1.11e-67 6l7p:F
3 8e9g:L 625 562 0.2783 0.2672 0.2972 4.58e-54 8e9h:L, 8e9i:L
4 6rfq:5 654 352 0.2000 0.1835 0.3409 2.38e-51 7o6y:5, 6rfr:5
5 3rko:L 612 368 0.1933 0.1895 0.3152 1.08e-45 3rko:B
6 7a23:a 600 351 0.1800 0.1800 0.3077 3.91e-45
7 8qby:L 659 435 0.2050 0.1866 0.2828 2.50e-44 8qc1:L
8 8bpx:L 665 387 0.1883 0.1699 0.2920 4.69e-44 8bef:L
9 7zme:5 670 371 0.1783 0.1597 0.2884 4.06e-40 7zmg:5
10 5lnk:L 599 343 0.1683 0.1686 0.2945 4.83e-39
11 7v2h:l 606 339 0.1650 0.1634 0.2920 4.17e-38 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
12 8gym:n5 709 277 0.1233 0.1044 0.2671 3.03e-24 8gym:N5, 7tgh:5
13 4wz7:5 619 335 0.1700 0.1648 0.3045 7.84e-22 6h8k:5
14 3rko:M 504 320 0.1400 0.1667 0.2625 2.47e-15 3rko:C
15 8bpx:M 494 285 0.1067 0.1296 0.2246 4.54e-13 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
16 8qby:M 503 365 0.1567 0.1869 0.2575 1.64e-12 8qc1:M
17 8e9i:M 518 300 0.1250 0.1448 0.2500 4.97e-12 8e9g:M, 8e9h:M
18 7v2c:r 459 283 0.1133 0.1481 0.2403 1.66e-08 7v2d:r, 7v2e:r, 7v2f:r, 7v2h:r, 7v2k:r, 7v2r:r, 7v30:r, 7v31:r, 7v32:r, 7v33:r, 7v3m:r, 7vbl:r, 7vbp:r, 7vc0:r, 7vwl:r, 7vxs:r, 7vy1:r, 7vy9:r, 7vye:r, 7vyg:r, 7vyi:r, 7vys:r, 7vz8:r, 7vzv:r, 7vzw:r, 7w00:r, 7w0h:r, 7w0r:r, 7w0y:r, 7w1o:r, 7w1p:r, 7w1t:r, 7w1u:r, 7w1v:r, 7w1z:r, 7w20:r, 7w2k:r, 7w2l:r, 7w2r:r, 7w2u:r, 7w2y:r, 7w31:r, 7w32:r, 7w35:r, 7w4c:r, 7w4d:r, 7w4e:r, 7w4f:r, 7w4g:r, 7w4j:r, 7w4k:r, 7w4l:r, 7w4m:r, 7w4n:r, 7w4q:r
19 5lnk:M 459 263 0.1100 0.1438 0.2510 9.03e-08 8q0a:M, 8q0f:M, 8q0m:M, 8q0o:M, 8q1y:M, 8q25:M, 8q45:M, 8q48:M, 8q49:M, 8q4a:M, 7qso:M, 7r4f:M, 7r4g:M, 6zkm:M, 6zkn:M, 6zku:M, 6zkv:M
20 6l7o:B 493 276 0.1133 0.1379 0.2464 1.06e-07 6l7p:B
21 5xtc:r 459 315 0.1350 0.1765 0.2571 1.14e-07 5xtd:r, 5xth:r, 5xti:r, 5xti:Br
22 7zmb:2 558 298 0.1100 0.1183 0.2215 3.45e-07 7zme:2, 7zmg:2, 7zmh:2
23 6l7o:D 504 295 0.1150 0.1369 0.2339 9.10e-07 6l7p:D
24 8iaq:N 344 219 0.0850 0.1483 0.2329 1.55e-05 8ib6:N, 8ibb:N, 8ibf:N, 8ic4:N
25 7aqq:N 488 304 0.1283 0.1578 0.2533 7.80e-05 7a23:I, 7a24:I, 7ar7:N, 7ar8:N, 8bef:N, 8bpx:N
26 5xtc:i 347 235 0.0933 0.1614 0.2383 2.84e-04 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
27 7qso:N 347 241 0.0917 0.1585 0.2282 3.76e-04 7r41:N, 7r42:N, 7r44:N, 7r45:N, 7r47:N, 7r48:N, 7r4c:N, 7r4d:N, 7r4f:N, 7r4g:N, 6zkm:N, 6zkn:N, 6zku:N, 6zkv:N
28 8qby:N 479 276 0.1100 0.1378 0.2391 0.003
29 5gup:i 347 245 0.0950 0.1643 0.2327 0.015 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
30 7zkq:2 448 205 0.0883 0.1183 0.2585 0.020
31 7o6y:2 469 207 0.0883 0.1130 0.2560 0.027 7o71:2, 6rfq:2, 6rfr:2, 6y79:2, 7zkp:2
32 8iaq:M 459 271 0.0933 0.1220 0.2066 0.099 8ib6:M, 8ibb:M, 8ibf:M, 8ic4:M
33 6rfq:4 486 245 0.0817 0.1008 0.2000 0.99 6rfr:4, 6y79:4
34 7zmb:4 494 243 0.0950 0.1154 0.2346 1.7 7zme:4, 7zmg:4, 7zmh:4
35 5zi2:A 339 57 0.0317 0.0560 0.3333 3.5 5zi2:B, 5zi4:A, 5zi4:B
36 2igt:A 313 97 0.0433 0.0831 0.2680 6.1 2igt:B, 2igt:C
37 8iuf:N4 478 42 0.0250 0.0314 0.3571 6.2 8j9h:N4, 8j9i:N4, 8j9j:N4
38 2r8q:A 335 34 0.0217 0.0388 0.3824 6.8 2r8q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218