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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FADAQRSHYTVYPSLPQSNKNDKHIPFVKLLSGKESEVNVEKRWELYHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSE
TTQKRRCFNTIFLLGSDSTTKIELKDESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHNDVSYDLSLVENFKR
LFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNINTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKG
FKYGNQIFQSFLDTVDGKLNLSDRFVEFILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKI
LSRCPTFMFFVEGLIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNITNFNLIELYHNLLI
GKLDSYLDRWSACKEYKDRLHFEPIDTIFQELFTLDNRSGLLTQSIFPSYKSNIEDNLLSWEQVLPSLDKENYDTLSGDL
DKIMAPVLGQLFKLYREANMTINIYDFYIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFEN
MGLIKFQSTKSYDLVEKCVWRG

The query sequence (length=582) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mca:C 584 583 1.0000 0.9966 0.9983 0.0 6rqc:C, 6wgi:C, 5zr1:C
2 7tjf:C 554 581 0.9502 0.9982 0.9518 0.0 7tjh:C, 7tji:C, 7tjj:C, 7tjk:C
3 5oey:D 301 40 0.0292 0.0565 0.4250 0.91
4 7m8i:A 572 98 0.0498 0.0507 0.2959 1.1 1ayf:A, 1ayf:B, 2bt6:A, 2bt6:B, 1cje:A, 1cje:B, 1cje:C, 1cje:D, 4dvq:A, 4dvq:B, 4dvq:C, 4dvq:D, 4dvq:E, 4dvq:F, 4dvq:G, 4dvq:H, 4dvq:I, 4dvq:J, 4dvq:K, 4dvq:L, 1e6e:D, 7e7f:A, 4fdh:A, 4fdh:B, 4fdh:C, 4fdh:D, 4fdh:E, 4fdh:F, 4fdh:G, 4fdh:H, 4fdh:I, 4fdh:J, 4fdh:K, 4fdh:L, 2jqr:B, 1l6v:A, 6m7x:A, 6m7x:B, 7m8i:B, 7m8i:C, 7m8v:A, 7m8v:B, 7m8v:C, 7m8v:D, 7m8v:E, 7m8v:F, 7m8v:G, 7m8v:H, 7m8v:I, 7m8v:J, 7m8v:K, 7m8v:L, 3n9y:C, 3n9y:D, 6xz8:A, 6xz8:B, 6xz8:C, 6xz9:A, 6xz9:B, 6xz9:C, 4zgx:A, 4zgx:B, 4zgx:C, 4zgx:D, 4zgx:E, 4zgx:F, 4zgx:G, 4zgx:H, 4zgx:I, 4zgx:J, 4zgx:K, 4zgx:L
5 4zs9:B 378 94 0.0412 0.0635 0.2553 1.6 4zs9:A, 4zza:A, 4zza:B, 4zze:A, 4zze:B
6 7jgs:C 614 32 0.0206 0.0195 0.3750 5.0 7jgr:C, 7jk2:C, 7jk3:C, 7jk4:C, 7jk5:C, 7jk6:C
7 4xgc:C 567 32 0.0206 0.0212 0.3750 5.2
8 3kv4:A 432 54 0.0275 0.0370 0.2963 5.2 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218