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BioLiP
>protein
FACVECRQQKSKCDAHPCTKCAKKNVPCILKRDFRRTYKRARNEAIEKRFKELTRTLTNL

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2er8:A 68 65 1.0000 0.8824 0.9231 3.65e-36 2er8:B, 2er8:C, 2er8:D, 2ere:A, 2ere:B, 2erg:A, 2erg:B
2 1pyi:A 88 59 0.3500 0.2386 0.3559 0.055 1pyi:B
3 1ajy:A 71 29 0.2000 0.1690 0.4138 0.67 1ajy:B, 1zme:C, 1zme:D
4 6o19:A 59 29 0.2167 0.2203 0.4483 0.77 6e33:A
5 8q3b:A 1423 17 0.1000 0.0042 0.3529 2.1 8q3k:A
6 6kmj:A 112 35 0.2167 0.1161 0.3714 2.7 7f3s:A
7 2vn0:A 464 56 0.3333 0.0431 0.3571 2.8 2nnh:A, 2nnh:B, 2nni:A, 2nnj:A, 1pq2:A, 1pq2:B
8 6gys:B 579 21 0.1667 0.0173 0.4762 4.4 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
9 1cld:A 33 30 0.2167 0.3939 0.4333 6.4
10 2rqb:A 135 36 0.1833 0.0815 0.3056 7.9 3ga3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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