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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGS
SYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gtv:A 279 158 0.9810 0.5556 0.9810 1.15e-110 5aal:A, 5aal:B, 5aap:A, 5abz:A, 5abz:B, 4att:A, 4auj:A, 4auy:A, 4auy:B, 4av0:A, 4av0:B, 4av4:A, 4av5:A, 4av5:B, 4av5:C, 4av5:D, 4avh:A, 4avh:B, 4avi:A, 4avi:B, 4avj:A, 4avj:B, 4avk:A, 4avk:B, 7ayn:A, 7ayn:B, 7ayn:C, 7ayn:D, 7bhd:A, 7bhd:B, 4buq:A, 4buq:B, 8bvd:A, 8bvd:B, 8bvd:C, 8bvd:D, 8bxy:A, 8bxy:B, 8by3:A, 8by3:C, 8by3:B, 8by3:D, 4ca4:A, 4ca4:B, 5cgb:A, 5cgb:B, 4css:A, 4cst:A, 5f2f:A, 5f3f:A, 5fs5:A, 5fwr:A, 5fwr:B, 5fwr:C, 5fwr:D, 5fwr:E, 5fwr:F, 5fwr:G, 5fwr:H, 6g2r:A, 6g2r:B, 6g2s:A, 6g2s:B, 6g2s:C, 6g2s:D, 6g2s:E, 6g2s:F, 6g2s:G, 6g2s:H, 6g2s:I, 6gtv:C, 6gtw:C, 6gtw:B, 6gtw:A, 6gtw:D, 6gtx:A, 6gtx:B, 6gtx:C, 6gtx:D, 6gty:A, 6gty:B, 6gty:C, 6gty:D, 6gty:E, 6gtz:A, 6gtz:C, 6gu0:A, 5jcq:A, 5jcq:B, 5jcr:A, 5jcr:B, 5jqi:H, 5jqi:B, 5jqi:D, 5jqi:F, 5jr4:A, 1kiu:B, 1kiu:D, 1kiu:F, 1kiu:H, 1kiu:J, 1kiu:L, 1kiu:N, 1kiu:P, 1klf:B, 1klf:D, 1klf:F, 1klf:H, 1klf:J, 1klf:L, 1klf:N, 1klf:P, 5l4t:A, 5l4t:B, 5l4u:A, 5l4u:B, 5l4v:A, 5l4v:B, 5l4v:C, 5l4w:A, 5l4w:B, 5l4w:C, 5l4x:A, 5l4x:B, 5l4y:A, 5l4y:B, 4lov:A, 3mcy:A, 3mcy:D, 3mcy:B, 3mcy:C, 5mts:A, 5mts:B, 5muc:A, 5muc:B, 7q3n:F, 7quo:A, 7quo:C, 7quo:B, 7quo:D, 1tr7:B, 1tr7:A, 1uwf:A, 2vco:A, 2vco:B, 4x50:A, 4x50:B, 4x5p:A, 4x5q:A, 4x5r:A, 4x5r:B, 4x5r:C, 4xo8:A, 4xo8:B, 4xo9:A, 4xoa:A, 4xoa:G, 4xoa:C, 4xoa:E, 4xob:A, 4xob:C, 4xob:E, 4xob:G, 4xoc:A, 4xoc:B, 4xod:A, 4xoe:A, 6yhw:A, 6yhw:B, 3zl1:A, 3zl1:B, 3zl2:A
2 9at9:B 163 158 0.8797 0.8528 0.8797 7.73e-102
3 5lne:B 162 160 0.4430 0.4321 0.4375 1.02e-33 6aox:A, 6aox:B, 6aoy:B, 6arm:A, 6arm:B, 6arn:A, 6arn:B, 6aro:A, 6aro:B, 6as8:A, 6as8:B, 5lne:A, 6map:B, 6maq:B, 6maw:A, 8usm:A, 8usm:B
4 1xzw:B 426 76 0.1456 0.0540 0.3026 0.028 1xzw:A
5 3c5i:D 355 153 0.2405 0.1070 0.2484 0.15 3c5i:C, 3c5i:A, 3c5i:B
6 3i6v:A 218 92 0.1646 0.1193 0.2826 0.98
7 4v8m:BZ 124 21 0.0570 0.0726 0.4286 2.6 8ova:BZ, 8ove:BZ
8 1c7s:A 858 84 0.1329 0.0245 0.2500 4.7 1c7t:A
9 6yxs:A 359 68 0.1266 0.0557 0.2941 6.8 3fi8:A, 6yxt:A
10 5foi:A 389 33 0.0696 0.0283 0.3333 7.4 5foi:B
11 3s69:A 234 31 0.0759 0.0513 0.3871 9.3
12 5vj1:D 276 60 0.1076 0.0616 0.2833 9.5 5vj1:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218