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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EYQDGKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKL
VSYRKAMYHALEKARVRAGKTFDQLKPMLEWAHGGFKPTGIEGLKPN

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5nrr:B 137 136 1.0000 0.9270 0.9338 9.39e-89 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
2 5ciu:B 121 127 0.9528 1.0000 0.9528 1.48e-82
3 9exy:B 135 51 0.1654 0.1556 0.4118 1.29e-05 6ue6:C, 6ue6:F
4 9exw:A 148 51 0.1417 0.1216 0.3529 3.95e-05 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
5 6g2b:A 123 23 0.1024 0.1057 0.5652 4.17e-04 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
6 6kcp:B 84 65 0.1339 0.2024 0.2615 0.003 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
7 5xsk:A 90 23 0.0945 0.1333 0.5217 0.018
8 6h2j:B 990 47 0.1181 0.0152 0.3191 0.075 4be7:B, 4be7:D, 4beb:A, 4beb:B, 4beb:C, 4beb:D, 4bec:A, 4bec:B, 6h2j:A, 2w00:A, 2w00:B, 4xjx:A, 4xjx:B
9 6iit:B 100 23 0.0866 0.1100 0.4783 0.095 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
10 8cbn:L 86 35 0.0866 0.1279 0.3143 0.097 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
11 3qj6:A 90 21 0.0866 0.1222 0.5238 0.30 3qby:B
12 4n4g:A 209 19 0.0866 0.0526 0.5789 0.33 4n4h:A, 4n4i:A, 4ns5:A
13 3mo8:A 127 21 0.0709 0.0709 0.4286 0.51 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
14 5j6f:A 352 71 0.1417 0.0511 0.2535 0.83 5j6f:B
15 5b73:A 313 14 0.0787 0.0319 0.7143 0.91 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
16 8t8a:A 583 89 0.1969 0.0429 0.2809 1.1 8jt7:A, 8t8a:B, 8t8a:C, 8t8a:D
17 3kn5:B 289 59 0.1496 0.0657 0.3220 1.7 3kn5:A, 7up4:A, 7up4:B, 7up5:A, 7up5:B, 7up6:A, 7up7:A, 7up7:B, 7up8:A, 7up8:B
18 3x1l:A 573 28 0.0945 0.0209 0.4286 5.2
19 7msw:A 635 27 0.0866 0.0173 0.4074 6.0 7exm:A, 7exm:B, 7exm:C, 7exm:D, 7msx:A
20 6pwu:A 615 19 0.0630 0.0130 0.4211 7.0 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
21 8u0w:A 1099 69 0.1496 0.0173 0.2754 7.3
22 8u0u:A 1126 69 0.1496 0.0169 0.2754 7.5 8u0u:F
23 8u3k:A 1150 69 0.1496 0.0165 0.2754 7.5 9ezy:A, 8u3k:F
24 9bf5:C 1190 69 0.1496 0.0160 0.2754 7.6 9bf5:D, 9c6q:C
25 8enl:C 382 88 0.1575 0.0524 0.2273 9.1
26 1vrp:B 374 17 0.0709 0.0241 0.5294 9.7 1vrp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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