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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EYNSEAYLKKLDKWWRAATYLGAGMIFLKENPLFSVTGTPIKAENLKANPIGHWGTVSGQTFLYAHANRLINKYDQKMFY
MGGPGHGGQAMVVPSYLDGSYTEAYPEITQDLEGMSRLFKRFSFPGGIGSHMTAQTPGSLHEGGELGYVLSHATGAILDQ
PEQIAFAVVGDGEAETGPLMTSWHSIKFINPKNDGAILPILDLNGFKISNPTLFARTSDVDIRKFFEGLGYSPRYIENDD
IHDYMAYHKLAAEVFDKAIEDIHQIQKDAREDNRYQNGEIPAWPIVIARLPKGWGGPRYNDWSGPKFDGKGMPIEHSFRA
HQVPLPLSSKNMGTLPEFVKWMTSYQPETLFNADGSLKEELRDFAPKGEMRMASNPVTNGGVDSSNLVLPDWQEFANPIS
ENNRGKLLPDTNDNMDMNVLSKYFAEIVKLNPTRFRLFGPDETMSNRFWEMFKVTNRQWMQVIKNPNDEFISPEGRIIDS
QLSEHQAEGWLEGYTLTGRTGAFASYESFLRVVDSMLTQHFKWIRQAADQKWRHDYPSLNVISTSTVFQQDHNGYTHQDP
GMLTHLAEKKSDFIRQYLPADGNTLLAVFDRAFQDRSKINHIVASKQPRQQWFTKEEAEKLATDGIATIDWASTAKDGEA
VDLVFASAGAEPTIETLAALHLVNEVFPQAKFRYVNVVELGRLQKKKGALNQERELSDEEFEKYFGPSGTPVIFGFHGYE
DLIESIFYQRGHDGLIVHGYREDGDITTTYDMRVYSELDRFHQAIDAMQVLYVNRKVNQGLAKAFIDRMKRTLVKHFEVT
RNEGVDIPDFTEWVWSDLK

The query sequence (length=819) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gua:A 821 819 1.0000 0.9976 1.0000 0.0 6gua:B, 6gua:C, 6gua:D, 6gua:E, 6gua:F, 6gua:G, 6gua:H
2 3ai7:A 813 821 0.4176 0.4207 0.4166 0.0 3ai7:B, 3ai7:C, 3ai7:D, 3ai7:E, 3ai7:F, 3ai7:G, 3ai7:H, 7c8h:A, 7c8h:B, 7c8h:C, 7c8h:D, 7c8h:E, 7c8h:F, 7c8h:G, 7c8h:H, 7c8i:A, 7c8i:B, 7c8i:C, 7c8i:D, 7c8i:E, 7c8i:F, 7c8i:G, 7c8i:H, 8io6:A, 8io6:B, 8io6:C, 8io6:D, 8io6:E, 8io6:F, 8io6:G, 8io6:H, 8io7:A, 8io7:B, 6lxv:A, 6lxv:B, 6lxv:C, 6lxv:D, 6lxv:E, 6lxv:F, 6lxv:G, 6lxv:H
3 8io8:A 788 809 0.4225 0.4391 0.4277 0.0 8io8:B, 8io9:A, 8io9:B, 8io9:C, 8io9:D, 8io9:E, 8io9:F, 8io9:G, 8io9:H, 8io9:I, 8io9:J, 8io9:K, 8io9:L, 8ioa:A, 8ioa:B, 8ioe:A, 8ioe:B, 8ioe:C, 8ioe:D, 8ioe:E, 8ioe:F, 8ioe:G, 8ioe:H, 8ioe:I, 8ioe:J, 8ioe:K, 8ioe:L
4 3ahc:A 802 823 0.4151 0.4239 0.4131 0.0 3ahd:A, 3ahe:A, 3ahf:A, 3ahg:A, 3ahh:A, 3ahi:A, 3ahj:A
5 6a50:A 527 46 0.0220 0.0342 0.3913 0.36 6a50:B, 1bfd:A, 5dei:A, 5dei:C, 5dei:D, 5dei:B, 5dgd:A, 5dgt:A, 3f6b:X, 3f6e:X, 2fn3:A, 3fsj:X, 2fwn:A, 3fzn:A, 3fzn:B, 3fzn:D, 3fzn:C, 4gg1:A, 4gm0:A, 4gm1:A, 4gm4:A, 4gp9:A, 4gpe:A, 4jd5:A, 4ju8:A, 4ju9:A, 4jua:A, 4jub:A, 4jub:D, 4jub:B, 4jub:C, 4juc:A, 4juc:C, 4juc:B, 4juc:D, 4jud:X, 4juf:A, 4juf:C, 4juf:B, 4juf:D, 4k9k:A, 4k9l:A, 4k9m:A, 4k9n:A, 4k9n:C, 4k9n:B, 4k9n:D, 4k9o:A, 4k9o:C, 4k9o:B, 4k9o:D, 4k9p:A, 4k9p:C, 4k9p:B, 4k9p:D, 6m2y:A, 6m2z:A, 1mcz:A, 1mcz:B, 1mcz:C, 1mcz:D, 1mcz:E, 1mcz:F, 1mcz:G, 1mcz:H, 1mcz:I, 1mcz:J, 1mcz:K, 1mcz:L, 1mcz:M, 1mcz:N, 1mcz:O, 1mcz:P, 4mpj:A, 4mpp:A, 4mpr:A, 4mq5:A, 4mzx:A, 1pi3:A, 1po7:A, 1q6z:A, 4qel:A, 2v3w:A, 2v3w:C, 2v3w:B, 2v3w:D, 1yno:A
6 3i8b:A 506 95 0.0354 0.0573 0.3053 0.44
7 6rjb:B 622 109 0.0330 0.0434 0.2477 0.73 6ha3:A, 6had:A, 4kxu:A, 4kxv:A, 4kxw:A, 4kxx:A, 4kxy:A, 4kxy:B, 3mos:A, 3ooy:A, 3ooy:B, 6rjb:A, 8wa8:A, 8wa9:A, 8wa9:B, 8waa:A, 8waa:B
8 6qsi:A 525 57 0.0244 0.0381 0.3509 1.4 6qsi:B
9 8eew:A 766 97 0.0269 0.0287 0.2268 2.6 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
10 4wci:C 63 37 0.0208 0.2698 0.4595 4.3 2j6f:A, 2j6o:A, 2j7i:A, 2j7i:B, 4wci:A, 4wci:E
11 6yak:AAA 282 82 0.0281 0.0816 0.2805 5.9 6yak:CCC
12 3m49:A 665 123 0.0391 0.0481 0.2602 7.6 3hyl:A, 3hyl:B, 3m49:B
13 8a45:F 573 174 0.0574 0.0820 0.2701 7.8 8a29:A, 8a29:B, 8a29:C, 8a29:D, 8a29:E, 8a29:F, 8a45:A, 8a45:B, 8a45:C, 8a45:D, 8a45:E, 8a4d:A, 8a4d:B, 8a4d:C, 8a4d:D, 8a4d:E, 8a4d:F, 8a5k:A, 8a5k:B, 8a5k:C, 8a5k:D, 8a5k:E, 8a5k:F
14 7orx:CCC 531 48 0.0195 0.0301 0.3333 8.0 7orx:AAA, 7orx:BBB, 7orx:DDD
15 6kwn:A 275 94 0.0330 0.0982 0.2872 8.6 6kwo:A, 6lf9:D, 6lf9:A, 6lf9:G, 6lf9:J
16 8p97:A 623 126 0.0342 0.0449 0.2222 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218