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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EYLTKDSFSYEVYGIIAMQAAYRDYDSGDAKQDDNLGGMQLNNESRIGFRGKKQFANFEPTFIWQIEGGYVDPSFGGEGA
GLGERDTFVGFESASWGQVRLGRVLTPMYELVDWPASNPGLGDVYDWGGAIGGAKYQDRQSNTIRWDSPMYADKFSIDAA
VGAGDKAGLGAGDDYWGGIAAHYKLGPLQLDAAYEGNRNIEAEGQTWENNTYLVGVQGWFENGISFFAQYKYMEADASNG
VNEKQDAMSAGLMYTTGDWQYKLGYAANFDLERDGKTLSNTSDDVVSAQIMYFVDPSAVLYARARMNDFNEGLDGLDDAA
RWTSGTNGDYNEYSVGVEYYF

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8juq:A 350 341 1.0000 0.9743 1.0000 0.0 7eqm:A, 7eqm:B, 7eqm:C, 7eqr:A, 7eqr:B, 7eqr:C, 7eqr:D, 7eqr:E, 7eqr:F, 8juq:B, 8juq:C, 8juq:G, 8juq:H, 8jur:A, 8jur:B, 5mdo:A, 5mdo:B, 5mdo:C, 5mdo:D, 5mdo:E, 5mdr:A, 5mdr:B, 5mdr:C, 5mdr:D, 5mdr:E, 7x5p:A, 7x5p:B, 7x5p:C, 7x5p:D, 7x5p:E, 7x5p:F, 7x5q:B, 7x5q:A, 7x5q:D
2 3a2s:X 341 112 0.1056 0.1056 0.3214 7.48e-04 3vzu:X, 3vzw:X
3 1e54:A 332 197 0.1584 0.1627 0.2741 0.035 2fgq:X, 2fgr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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