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BioLiP
>protein
EWTGDARDGMFSGVVITQFHTGQIDNKPYFCIEGKQSAGSSISACSMKNSSVWGASFSTLYNQALYFYTTGQPVRIYYEP
GVWTYPPFVKALTSNALVGLSTCTTSTECFGPDRKK

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dwp:C 120 116 1.0000 0.9667 1.0000 2.54e-85 3dwp:A, 3dwp:B, 3dwp:D, 3dwp:E, 3dwq:A, 3dwq:C, 3dwq:D, 3dwq:E
2 6p4q:B 115 114 0.4914 0.4957 0.5000 1.47e-38 7k7h:E, 6p4m:A, 6p4m:B, 6p4m:C, 6p4m:D, 6p4m:E, 6p4n:C, 6p4n:D, 6p4n:E, 6p4q:A, 6p4q:C, 6p4q:D, 6p4q:E, 6p4r:A, 6p4r:B, 6p4r:C, 6p4r:D, 6p4r:E, 6p4t:A, 6p4t:C, 6p4t:D, 4rhs:C, 4rhs:E, 6tyn:A, 6tyn:C, 6tyn:D, 6tyn:E, 6tyo:A, 6tyo:C, 6tyo:D, 6tyo:E, 6tyq:C, 6tyq:D, 6tyq:E, 5wht:A, 5wht:C, 5wht:B, 5wht:D
3 7ee5:E 120 87 0.3017 0.2917 0.4023 3.79e-16 7ee4:A, 7ee4:D, 7ee4:E, 7ee5:A, 7ee5:D
4 5whu:H 124 88 0.2672 0.2500 0.3523 4.59e-13 5whu:A, 5whu:C, 5whu:D, 5whu:E, 5whu:I, 5whu:J, 5whv:F
5 1jmx:A 493 18 0.0862 0.0203 0.5556 1.7 1jmz:A
6 5ngy:A 1265 18 0.0776 0.0071 0.5000 9.1 6htv:A, 5lfc:A, 5lfc:B, 5ngy:B, 5o8l:A
7 2z2p:A 293 83 0.1638 0.0648 0.2289 9.4 2z2p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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